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added example gp120 alignment

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commit 5826841181f345f93f9d813dbbf7fdc9bdbb3251 1 parent 640ce1b
Oscar Westesson authored December 30, 2011

Showing 1 changed file with 114 additions and 0 deletions. Show diff stats Hide diff stats

  1. 114  data/handalign/hiv_gp120/gp120.fa
114  data/handalign/hiv_gp120/gp120.fa
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  1
+>ENV_SIVG1/22-522
  2
+LYVTVFYGIPVWKNSTVQAFCMTPNTNMWATTNCIPDDHDNTEVPLNITE
  3
+AFEAWDNPLVKQAESNIHLLFEQTMRPCVKLSPICIKMSCVELNGTATTK
  4
+ATTTATTTMTTPCQNCSTEQIEGEMAEEPASNCTFAIAGYQRDVKKNYSM
  5
+TWYDQELVCNNKTGSEKGSKDCYMIHCNDSVIKEACDKTYWDTLRVRYCA
  6
+PAGYALLKCNDKDYRGFAPKCKNVSVVHCTRLINTTITTGIGLNGSRSEN
  7
+RTEIWQKGGNDNDTVIIKLNKFYNLTVRCRRPGNKTVLPVTIMAGLVFHS
  8
+QKYNTRLKQAWCHFQGDWKGAWKEVREEVKKVKNLTEVSIENIHLRRIWG
  9
+DPESANFWFNCQGEFFYCKMDWFINYLNNRTEDAEGTNRTCDKGKPGPGP
  10
+CVQRTYVACHIRQVVNDWYTVSKKVYAPPREGHLECNSSVTALYVAIDYN
  11
+NKSGPINVTLSPQVRSIWAYELGDYKLVEITPIGFAPTDVRRYTGPTREK
  12
+R
  13
+>ENV_HV2BE/24-510
  14
+QYVTVFYGIPAWKNASIPLFCATKNRDTWGTIQCLPDNDDYQEIILNVTE
  15
+AFDAWNNTVTEQAVEDVWHLFETSIKPCVKLTPLCVAMNCSRVQGNTTTP
  16
+NPRTSSSTTSRPPTSAASIINETSNCIENNTCAGLGYEEMMQCEFNMKGL
  17
+EQDKKRRYKDTWYLEDVVCDNTTAGTCYMRHCNTSIIKESCDKHYWDAMR
  18
+FRYCAPPGFALLRCNDTNYSGFEPKCTKVVAASCTRMMETQTSTWFGFNG
  19
+TRAENRTYIYWHGRDNRTIISLNKYYNLTMRCKRPGNKTVLPITLMSGLV
  20
+FHSQPINTRPRQAWCRFGGRWREAMQEVKQTLVQHPRYKGINDTGKINFT
  21
+KPGAGSDPEVAFMWTNCRGEFLYCNMTWFLNWVEDKNQTRRNYCHIKQII
  22
+NTWHKVGKNVYLPPREGELACESTVTSIIANIDIDKNRTHTNITFSAEVA
  23
+ELYRLELGDYKLIEITPIGFAPTDQRRYSSTPVRNKR
  24
+>ENV_SIVGB/47-569
  25
+QYVTVFYGVPVWKEAKTHLICATDNSSLWVTTNCIPSLPDYDEVEIPDIK
  26
+ENFTGLIRENQIVYQAWHAMGSMLDTILKPCVKINPYCVKMQCQETENVS
  27
+ATTAKPITTPTTTSTVASSTEIYLDVDKNNTEEKVERNHVCRYNITGLCR
  28
+DSKEEIVTNFRGDDVKCENNTCYMNHCNESVNTEDCQKGLLIRCILGCVP
  29
+PGYVMLRYNEKLNNNKLCSNISAVQCTQHLVATVSSFFGFNGTMHKEGEL
  30
+IPIDDKYRGPEEFHQRKFVYKVPGKYGLKIECHRKGNRSVVSTPSATGLL
  31
+FYHGLEPGKNLKKGMCTFKGRWGLALWSLAKELNKLNDSIKVNQTCKNFT
  32
+STGEENKQNTDKQKEFAKCIKTLKIDNYTTSGDRAAEMMMMTCQGEMFFC
  33
+NVTRIMRAWNDPNEKKWYPYASCQIRQIVDDWMQVGRKIYLPPTSGFNNH
  34
+IRCTHRVTEMYFEMQKIDSNETKMQIKFLPPSETSNQFVAYGAHYKLVKI
  35
+MPIGIAPTDVKRHTLPEHHKEKR
  36
+>ENV_SIVV1/24-538
  37
+QWITVFYGVPVWKNSSVQAFCMTPTTRLWATTNCIPDDHDYTEVPLNITE
  38
+PFEAWADRNPLVAQAGSNIHLLFEQTLKPCVKLSPLCIKMNCVELKGSAT
  39
+STPATSTTAGTKLPCVRNKTDSNLQSCNDTIIEKEMNDEAASNCTFAMAG
  40
+YIRDQKKNYSVVWNDAEIFCKRSTSHNGTKECYMIHCNDSVIKEACDKTY
  41
+WDELRLRYCAPAGYALLKCNDWDYAGFKPECSNVSVVHCTTLMNTTVTTG
  42
+LLLNGSYSENRTQIWQKHGVSNDSVLILLNKHYNLTVTCKRPGNKTVLPV
  43
+TIMAGLVFHSQKYNTRLRQAWCHFQGNWKGAWKEVQEEIVKLPKERYQGT
  44
+NDTNKIFLQRQFGDPEAANLWFNCQGEFFYCKMDWFLNYLNNLTVDADHN
  45
+HCKNNAGKGRSPGPCVQRTYVACHIRSVINDWYTISKKTYAPPREGHLQC
  46
+TSTVTGMTVELNYNNQNRTNVTLSPQIETIWAAELGRYKLVEITPIGFAP
  47
+TEVRRYTGGQERQKR
  48
+>ENV_SIVM1/24-528
  49
+QYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNDDYSELALNVTE
  50
+SFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDKWGL
  51
+TKSSTTTASTTTTTTAKSVETRDIVNETSPCVVHDNCTGLEQEPMISCKF
  52
+NMTGLKRDKKKEYNETWYSADLVCEQGNSTGNESRCYMNHCNTSVIQECC
  53
+DKDYWDAIRCRYCAPPGYALLRCNDTNYSGFMPNCSKVVVSSCTRMMETQ
  54
+TSTWFRFNGTRAENRTYIYWHGRDNRTIISLNKHYNLTMKCRRPGNKTVL
  55
+PVTIMSALVFHSQPVNERPKQAWCRFGGNWKEAIKEVKQTIVKHPRYTGT
  56
+NNTDKINLTAPRGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRSLTTQK
  57
+PKERHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANI
  58
+NWTDGNQTSITMSAEVAELYRLELGDYKLVEITPIGLAPTNVKRYTTGGT
  59
+SRNKR
  60
+>ENV_HV2CA/25-512
  61
+QYVTVFYGVPAWKNASIPLFCATKNRDTWGTIQCLPDNDDYQEIPLNVTE
  62
+AFDAWDNTITEQAIEDVWNLFETSIKPCVKLTPLCVAMKCNISTSDTTMI
  63
+RTTTPSTAKEAPISDNSPCIRTNNCSGLEEEKIVKCHFNMTGLERDKKKQ
  64
+YNETWYSSDVVCDNSTDQTTNETTCYMNHCNTSVITESCDKHYWDAMRFR
  65
+YCAPPGFAILRCNDTKYSGFAPNCSKVVASTCTRMMETQTSTWFGFNGTR
  66
+AENRTYIYWHGKDNRTIISLNKHYNLSMYCRRPGNKTVVPITLMSGQRFH
  67
+SRPIINKRPRQAWCWFKGNWTEAMQEVKQTLAEHPRYKGTKNITDITFKA
  68
+PERGSDPEVTYMWSNCRGEFFYCNMTWFLNWVENKPNTTKRNYAPCHIRQ
  69
+IINTWHKVGKNVYLPPREGELTCNSTVTSIIANIDERDNQTTNITFSADV
  70
+AELYRLELGDYKLVEITPIGFAPTSQKRYSPAHGRPKR
  71
+>ENV_HV2G1/23-502
  72
+QYVTVFYGVPVWRNASIPLFCATKNRDTWGTIQCKPDNDDYQEITLNVTE
  73
+AFDAWDNTVTEQAVEDVWSLFETSIKPCVKLTPLCVAMSCNSTTNNTTTT
  74
+GSTTGMSEINETSPSYSDNCTGLGKEEIVNCQFYMTGLERDKKKQYNETW
  75
+YSKDVVCESNNTKDGKNRCYMNHCNTSVITESCDKHYWDAIKFRYCAPPG
  76
+YALLRCNDTNYSGFEPKCSKVVASTCTRMMETQTSTWFGFNGTRAENRTY
  77
+IYWHGRDNRTIISLNKYYNLSIHCKRPGNKTVVPITLMSGLVFHSQPINT
  78
+RPRQAWCWFKGKWREAMQEVKQTLIKHPRYKGTNDTKNINFTKPGRGSDP
  79
+EVAYMWTNCRGEFLYCNMTWFLNWVENRPNQTQHNYAPCHIRQIINTWHK
  80
+VGKNVYLPPREGQLTCNSTVTSIIANIDVNSNQTNITFSAEVAELYRLEL
  81
+GDYKLIEVTPIGFAPTREKRYSSAPVRNKR
  82
+>ENV_HV2NZ/24-502
  83
+QFVTVFYGIPAWRNASIPLFCATKNRDTWGTIQCLPDNDDYQEITLNVTE
  84
+AFDAWNNTVTEQAVEDVWNLFETSIKPCVKLTPLCVAMNCTRNMTTWTGR
  85
+TDTQNITIINDTSHARADNCTGLKEEEMIDCQFSMTGLERDKRKQYTEAW
  86
+YSKDVVCDNNTSSQSKCYMNHCNTSVITESCDKHYWDAMRFRYCAPPGFA
  87
+LLRCNDTNYSGFAPNCSKVVAATCTRMMETQTSTWFGFNGTRAENRTYIY
  88
+WHGKDNRTIISLNNFYNLTMHCKRPGNKTVLPITFMSGFKFHSQPVINKK
  89
+PRQAWCWFEGQWKEAMQEVKETLAKHPRYKGNRSRTENIKFKAPGRGSDP
  90
+EVTYMWTNCRGESLYCNMTWFLNWVENRTGQKQRNYAPCRIRQIINTWHR
  91
+VGKNLYLPPREGELTCNSTVTSIIANIDAGDQTNITFSAEAAELYRLELG
  92
+DYKLVEITPIGFAPTSVKRYSSAHQRHTR
  93
+>ENV_HV2D2/24-513
  94
+QYVTVFYGIPAWRNATVPLICATTNRDTWGTVQCLPDNGDYTEIRLNITE
  95
+AFDAWDNTVTQQAVDDVWRLFETSIKPCVKLTPLCVAMNCSKTETNPGNA
  96
+SSTTTTKPTTTSRGLKTINETDPCIKNDSCTGLGEEEIMQCNFSMTGLRR
  97
+DELKQYKDTWYSEDLECNNTRKYTSRCYIRTCNTTIIQESCDKHYWDSLR
  98
+FRYCAPPGFFLLRCNDTNYSGFMPNCSKVVASSCTRMMETQSSTWFGFNG
  99
+TRAENRTYIYWHEKDNRTIISLNTYYNLSIHCKRPGNKTVVPIRTVSGLL
  100
+FHSQPINKRPRQAWCWFKGNWTEAIKEVKRTIIKHPRYKGGAKNITSVKL
  101
+VSEHGKGSDPETTYMWTNCRGEFLYCNMTWFLNWVENKTNTTRRNYAPCH
  102
+IRQIINTWHKVGKNIYLPPREGELSCNSTVTSLIANINSDNSTTNISVSA
  103
+EVSELYRLELGDYKLVEITPIGFAPTDVRRYSSVKPRNKR
  104
+>ENV_HV2D1/24-501
  105
+QYVTVFYGIPAWRNASIPLFCATKNRDTWGTIQCLPDNDDYQEITLNVTE
  106
+AFDAWDNTVTEQAIEDVWRLFETSIKPCVKLTPLCVAMNCNITSGTTATP
  107
+SPPNITIIDENSTCIGDNNCTGLGKEEVVECEFNMTGLEQDKKRKYNDAW
  108
+YSRDVVCDKTNGTGTCYMRHCNTSVIKESCDKHYWDAMKFRYCAPPGFAL
  109
+LRCNDTNYSGFEPKCSKVVAASCTRMMETQTSTWFGFNGTRAENRTYIYW
  110
+HGKDNRTIISLNKYYNLTMHCKRPGNKTVVPITLMSGRRFHSRPVYNKKP
  111
+GQAWCWFQGNWIEAMREVKQTLAKHPRYGGTNDTGKINFTKPGIGSDPEV
  112
+TYMWTNCRGEFLYCNMTWFLNWVENKTNQTHGNYAPCHIRQIINTWHKVG
  113
+TNVYLPPREGELTCNSTVTSIIANIDSDGNQTNITFSAEVAELYRLELGD
  114
+YKLIEVTPIPFAPTKEKRYSSAPVRNKR

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