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TeX Emacs Lisp Perl
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phylocomposer
Makefile
README
algorithm2e.sty
auto-pst-pdf.sty
condensed-emission.dot
cs-labeled.dot
cs-mf-liv-machines.dot
cs-mf-liv-tree.dot
estimates_biases_condensed.png
fanned-emission.dot
fanned-indel.dot
fanned-match.dot
fork-subcs-submf.dot
fork-tkf91-tkf91.bigdot
fork-tkf91forward2-tkf91cs.dot
fork-tkf91liv-tkf91mf.bigdot
fork-tkf91viterbi-tkf91cs.bigdot
fork3-tkf91liv-tkf91mf-tkf91cs.fdpdot
forward2-fork-tkf91liv-tkf91mf.bigdot
forward2-profile.bigdot
forward2-root-fork-tkf91liv-tkf91mf.dot
graphviz-dot-mode.el
identity.dot
legend.dot
liv-labeled.bigdot
liv-small.dot
liv.bigdot
mf-generator.dot
mf-labeled.dot
mf-substituter-cs.dot
mf-substituter.dot
mf-tkf91-liv.bigdot
mf-tkf91.bigdot
moore-mf-generator.dot
moore-tkf91-liv.bigdot
moore-tkf91-mf.bigdot
null-model.dot
protpal-mix2.dot
protpal.dot
root-fork-subcs-submf.dot
root-fork-tkf91-tkf91.bigdot
root-fork-tkf91liv-tkf91mf.dot
substituter-cs.dot
substituter-mf.dot
substituter-substituter2.dot
substituter.dot
substituter2.dot
time.pdf
tkf91-labeled.dot
tkf91-liv.bigdot
tkf91-mf.bigdot
tkf91-root.dot
tkf91-tkf91.bigdot
tkf91.dot
transitions.dot
triplet.bigdot
tutorial.bbl
tutorial.tex
viterbi-fork-tkf91liv-tkf91mf.bigdot
viterbi-profile.bigdot
viterbi-root-fork-tkf91liv-tkf91mf.dot

README

Requirements (brackets show known working versions):
graphviz (2.28.0)
latex (TeX Live 2011)
dot2tex (2.9.0)
pyparsing (1.5.7)
phylocomposer (DART 0.2)
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