Software for error-tolerant coding of information into DNA sequences using finite-state transducers.
Reconstruction of phylogenetic insertion-deletion histories
Materials for UC Berkeley class BioE241
What is The Function of these genes?
DNA, Amino Acid and RNA Tests
Phylogenetic alignment parlor game
Applications Note for quaff
IDE for multiplayer choice-based fiction
A series of interesting choices.
Scheme hypertext framework
Algorithms to parse biological tree-adjoining grammars
Perl scripts for working with the GFF format
Perl scripts for munging UCSC hg19 table dumps
Z00 G45. A simple entropy-maximizing game on a Lotka-Volterra cellular automaton
Paper: "Evolutionary Triplet Models of Structured RNA", PLoS Comp Biol 2009