Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
..
Failed to load latest commit information.
algo
binary
data
geometry
label
math
measure
morphology
plugins
segment
util
watershed
README.md

README.md

Contents of the src/main/java/inra/ijpb directory

This directory contains various packages, organized according to their functionalities or to the type of images they are working on.

  • algo utilities to propagate events (progression, status change...) during execution of algorithms

  • binary a set of utilities for working on binary images (connected component labeling, distance transform, geodesic distance transform...)

  • data contains various data structure to represent images as well as utility data structures (connectivities, cursors...)

  • label contains utilities for label images (cropping, size opening, remove border labels, etc)

  • math re-implementation of some mathematical operations on images, that can be accessed programmatically (without calling a plugin)

  • measure several classes for extracting quantified parameters from 2D or 3D images

  • morphology a collection of mathematical morphology operators, comprising morphological filtering (opening, closing, dilation, top-hat...), geodesic reconstruction and related operators (hole filling, border killing, extraction of regional and/or extended minima or maxima...), and some utilities for managing label images

  • plugins the set of plugins that is accessible from ImageJ/Fiji Plugins menu

  • segment should contain several segmentation algorithms, but contains only threshold classes for the moment

  • util various utilities, for managing colormaps, or communicating with ImageJ

  • watershed morphological segmentation of grey-level images using watershed algorithm