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ilastik-shell, applets, and workflows to string them together.
Running Ilastik on Azure Batch
Volume Slicing and Editing
watershed on distance transform
Conda recipes for building ilastik dependencies.
Scripts to update our published conda packages when our recipes have changed.
nifty cPP and Python
Dynamic Programming Cell Tracking Solver
Standalone marching cubes implementation and Python bindings
tools for carving
ND Region Adjacency Graph with edge feature algorithms
Allocation tracking utility from the numpy source repo (which isn't installed by default), plus an extra module with some decorators.
fast gaussian and derivative convolutional filters
Select filter features with mutual-information-based methods
Python module for multi HYpotheses TRAcking
lazy parallel ondemand zero copy numpy array data flows with caching and dirty propagation
Small repo for tracking compatible versions of the ilastik subprojects via git submodules.
A conda-smithy repository for itk.
ImageJ plugins to run ilastik workflows
A library for monitoring application-wide events in pyqt and playing them back for testing purposes.
A conda-smithy repository for hdf5.
Live clone of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5.git.
Lighweight C++ and Python interface for datasets in zarr and N5 format
hdf5 to xml