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1. htsjdk htsjdk Public

   Forked from samtools/htsjdk

   A Java API for high-throughput sequencing data (HTS) formats.

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2. picard picard Public

   Forked from broadinstitute/picard

   A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.sourceforge.net) format.

   Java

3. gatk-protected gatk-protected Public

   Forked from broadgsa/gatk-protected

   GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only

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4. genomics-dataflow genomics-dataflow Public

5. dataflow-java dataflow-java Public

   Forked from googlegenomics/dataflow-java

   Provides several Google Cloud Dataflow pipeline examples as well as useful utility classes.

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6. start-here start-here Public

   Forked from googlegenomics/readthedocs

   Documentation for the Google Genomics cookbook.