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Imagen MRI data processing

freesurfer
Segmentation of structural MRI data with FreeSurfer.
tbss_dti
Preprocessing of DTI data with mrtrix, dtitk, ants and fsl (current version).
fsl_dti
Preprocessing of DTI data with fsl (old version).
onsets_contrasts
From CSV behavioral files to onsets.
rsfMRI_preprocessing
Preprocessing of resting-state fMRI data with FSL and ANTS.

Obsolete FU2 processing code

spm_new_segment_FU2
Segmentation of baseline and FU2 structural MRI data with SPM.
spm_preprocessing_FU2
Preprocessing of baseline and FU2 task-based fMRI data with SPM.
spm_first_level_FU2
1st level processing of baseline and FU2 task-based fMRI data with SPM.