diff --git a/R/gene_plot.R b/R/gene_plot.R
index 71f3294..5aef5b7 100644
--- a/R/gene_plot.R
+++ b/R/gene_plot.R
@@ -58,7 +58,7 @@
 #' rownames(dds_macrophage) <- substr(rownames(dds_macrophage), 1, 15)
 #' keep <- rowSums(counts(dds_macrophage) >= 10) >= 6
 #' dds_macrophage <- dds_macrophage[keep, ]
-#' dds_macrophage <- DESeq(dds_macrophage)
+#' # dds_macrophage <- DESeq(dds_macrophage)
 #'
 #' # annotation object
 #' anno_df <- data.frame(
@@ -249,7 +249,7 @@ gene_plot <- function(de_container,
 #' rownames(dds_macrophage) <- substr(rownames(dds_macrophage), 1, 15)
 #' keep <- rowSums(counts(dds_macrophage) >= 10) >= 6
 #' dds_macrophage <- dds_macrophage[keep, ]
-#' dds_macrophage <- DESeq(dds_macrophage)
+#' # dds_macrophage <- DESeq(dds_macrophage)
 #'
 #' df_exp <- get_expr_values(
 #'   de_container = dds_macrophage,
diff --git a/R/mosdef_check_inputs.R b/R/mosdef_check_inputs.R
index 57fc891..67f6bfd 100644
--- a/R/mosdef_check_inputs.R
+++ b/R/mosdef_check_inputs.R
@@ -81,7 +81,7 @@ mosdef_res_check <- function(res_de,
 #' rownames(dds_macrophage) <- substr(rownames(dds_macrophage), 1, 15)
 #' keep <- rowSums(counts(dds_macrophage) >= 10) >= 6
 #' dds_macrophage <- dds_macrophage[keep, ]
-#' dds_macrophage <- DESeq(dds_macrophage)
+#' # dds_macrophage <- DESeq(dds_macrophage)
 #'
 #' mosdef_de_container_check(dds_macrophage)
 mosdef_de_container_check <- function(de_container,
diff --git a/man/gene_plot.Rd b/man/gene_plot.Rd
index e7d5b72..3027d42 100644
--- a/man/gene_plot.Rd
+++ b/man/gene_plot.Rd
@@ -80,7 +80,7 @@ dds_macrophage <- DESeqDataSet(gse, design = ~ line + condition)
 rownames(dds_macrophage) <- substr(rownames(dds_macrophage), 1, 15)
 keep <- rowSums(counts(dds_macrophage) >= 10) >= 6
 dds_macrophage <- dds_macrophage[keep, ]
-dds_macrophage <- DESeq(dds_macrophage)
+# dds_macrophage <- DESeq(dds_macrophage)
 
 # annotation object
 anno_df <- data.frame(
diff --git a/man/get_expr_values.Rd b/man/get_expr_values.Rd
index c0019b0..18aa5b1 100644
--- a/man/get_expr_values.Rd
+++ b/man/get_expr_values.Rd
@@ -50,7 +50,7 @@ dds_macrophage <- DESeqDataSet(gse, design = ~ line + condition)
 rownames(dds_macrophage) <- substr(rownames(dds_macrophage), 1, 15)
 keep <- rowSums(counts(dds_macrophage) >= 10) >= 6
 dds_macrophage <- dds_macrophage[keep, ]
-dds_macrophage <- DESeq(dds_macrophage)
+# dds_macrophage <- DESeq(dds_macrophage)
 
 df_exp <- get_expr_values(
   de_container = dds_macrophage,
diff --git a/man/mosdef_de_container_check.Rd b/man/mosdef_de_container_check.Rd
index c8d042e..f3af3ef 100644
--- a/man/mosdef_de_container_check.Rd
+++ b/man/mosdef_de_container_check.Rd
@@ -30,7 +30,7 @@ dds_macrophage <- DESeqDataSet(gse, design = ~ line + condition)
 rownames(dds_macrophage) <- substr(rownames(dds_macrophage), 1, 15)
 keep <- rowSums(counts(dds_macrophage) >= 10) >= 6
 dds_macrophage <- dds_macrophage[keep, ]
-dds_macrophage <- DESeq(dds_macrophage)
+# dds_macrophage <- DESeq(dds_macrophage)
 
 mosdef_de_container_check(dds_macrophage)
 }