CMakeLists.txt

[ghost]

Hi,

I'm running on Ubuntu 16.04
The following packages are installed:
g++ 5.4.0
qt5-default 5.5.1
libqt5xmlpatterns5-dev 5.5.1
libqt5sql5-mysql 5.5.1
cmake 3.5.1

$ make build_3rdparty
cd bamtools && rm -rf bin build lib include src/toolkit/bamtools_version.h
mkdir bamtools/build
cd bamtools/build && cmake .. && make
CMake Error: The source directory "/home/bioinf/Software/ngs-bits-master/bamtools" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
Makefile:108: recipe for target 'build_3rdparty' failed
make: *** [build_3rdparty] Error 1

Any ideas what went wrong here?

[marc-sturm]

I guess the bamtools folder is empty. In that case you probably have cloned without the '--recursive' argument. Best, Marc

…

On Wed, May 24, 2017 at 1:53 PM, bioprog ***@***.***> wrote: Hi, I'm running on Ubuntu 16.04 The following packages are installed: g++ 5.4.0 qt5-default 5.5.1 libqt5xmlpatterns5-dev 5.5.1 libqt5sql5-mysql 5.5.1 cmake 3.5.1 $ make build_3rdparty cd bamtools && rm -rf bin build lib include src/toolkit/bamtools_version.h mkdir bamtools/build cd bamtools/build && cmake .. && make CMake Error: The source directory "/home/bioinf/Software/ngs-bits-master/bamtools" does not appear to contain CMakeLists.txt. Specify --help for usage, or press the help button on the CMake GUI. Makefile:108: recipe for target 'build_3rdparty' failed make: *** [build_3rdparty] Error 1 Any ideas what went wrong here? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#7>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFYIAGLBbxJBoieIwoyOPPvtHqZq16vgks5r9BowgaJpZM4Nk_xO> .

[ghost]

Hi Marc,
I didn't use the command from the documentation, I just clicked on the green button ("Clone or Download" -> "Download ZIP"). I'm gonna try it again now via git. Why does this make a difference btw?

[marc-sturm]

When the project includes other sub-projects, a non-recursive clone will not clone the sub-projects. Best, Marc Am 26.05.2017 11:25 schrieb "bioprog" <notifications@github.com>: Hi Marc, I didn't use the command from the documentation, I just clicked on the green button ("Clone or Download" -> "Download ZIP"). I'm gonna try it again now via git. Why does this make a difference btw? — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#7 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFYIAGQBXCF5HeNOf85tgniKf_RCECA3ks5r9pp7gaJpZM4Nk_xO> .

[ghost]

During compilation there are several warnings about int / uint comparisons + set but unused variables ... but I guess you're aware of that.
But it's working now, thanks :)