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Autodoc commit for 1.5.5/2b6a9ab0, 1.4.1/c986a89b, master/dabbbb8b

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1 parent f8e7aeb commit 7a916ad31764f736503cc77e317ee23c77f307fe Tom Faulhaber committed Jun 6, 2016
Showing with 2,685 additions and 2,385 deletions.
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View
@@ -55,19 +55,19 @@
<div id="right-sidebar"></div>
<div id="content-tag"><h1 id="overview">Index of Public Functions and Variables - <span id="header-project">Incanter</span> <span id="header-version">1.5.5</span><span id="header-status-block"> (<span id="header-status">stable</span>)</span></h1>
This page has an alphabetical index of all the documented functions and variables
-in <span class="project-name-span">Incanter</span>.
+in <span class="project-name-span">Incanter</span>.
<!-- TODO: enable this functionality on github?
-In a narrow browser window, you may want to collapse the sidebar (use the \"<<\" link)
-to get more screen space for the index.
+In a narrow browser window, you may want to collapse the sidebar (use the \"<<\" link)
+to get more screen space for the index.
-->
-
-<div class="shortcuts">
+<p>
+</p><div class="shortcuts">
Shortcuts:<br />
<a href="#A">A</a> <a href="#B">B</a> <a href="#C">C</a> <a href="#D">D</a>
<a href="#E">E</a> <a href="#F">F</a> <a href="#G">G</a> <a href="#H">H</a>
- <a href="#I">I</a> <a href="#J">J</a> <a href="#K">K</a> <a href="#L">L</a>
+ <a href="#I">I</a> <a href="#J">J</a> <a href="#K">K</a> <a href="#L">L</a>
<a href="#M">M</a>
<br />
<a href="#N">N</a> <a href="#O">O</a> <a href="#P">P</a> <a href="#Q">Q</a>
View
@@ -78,6 +78,9 @@ <h1 class="nopad">Table of Contents</h1>
<a href="#incanter.bayes/sample-proportions" class="toc-entry-anchor">sample-proportions</a>
</div>
+ </div><div class="toc-section" style="margin-left: 1em;">
+ <a style="margin-top: 3px;" href="#"></a>
+
</div>
</div>
</div>
@@ -108,7 +111,6 @@ <h2 id="incanter.bayes/sample-model-params">sample-model-params</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (sample-model-params size {:keys [x y coefs residuals]})
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr">
Returns a sample of the given size of the parameters (coefficients and
error variance) of the given linear-model. The sample is generated using
@@ -142,6 +144,7 @@ <h2 id="incanter.bayes/sample-model-params">sample-model-params</h2>
;; show the 95% bayesian confidence interval for the first coefficient
(quantile (sel (:coefs param-samp) :cols 0) :probs [0.025 0.975])
</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/f23547637a9ee1d901725f591cfc09a1a2dc46c1/modules/incanter-core/src/incanter/bayes.clj#L35">Source</a>
@@ -152,7 +155,6 @@ <h2 id="incanter.bayes/sample-multinomial-params">sample-multinomial-params</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (sample-multinomial-params size counts)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr">
Returns a sample of multinomial proportion parameters.
The counts are assumed to have a multinomial distribution.
@@ -182,6 +184,7 @@ <h2 id="incanter.bayes/sample-multinomial-params">sample-multinomial-params</h2>
;; two candidates
(view (histogram (minus (sel samp-props :cols 0) (sel samp-props :cols 1))))
</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/f23547637a9ee1d901725f591cfc09a1a2dc46c1/modules/incanter-core/src/incanter/bayes.clj#L95">Source</a>
@@ -192,7 +195,6 @@ <h2 id="incanter.bayes/sample-mvn-params">sample-mvn-params</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (sample-mvn-params size y &amp; options)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr">
Returns samples of means (sampled from an mvn distribution) and vectorized covariance
matrices (sampled from an inverse-wishart distribution) for the given mvn data.
@@ -234,6 +236,7 @@ <h2 id="incanter.bayes/sample-mvn-params">sample-mvn-params</h2>
(symmetric-matrix (map mean (trans (:sigmas samp))) :lower false)
(map mean (trans (:means samp)))
</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/f23547637a9ee1d901725f591cfc09a1a2dc46c1/modules/incanter-core/src/incanter/bayes.clj#L131">Source</a>
@@ -244,14 +247,15 @@ <h2 id="incanter.bayes/sample-proportions">sample-proportions</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (sample-proportions size counts)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr">sample-proportions has been renamed sample-multinomial-params</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/f23547637a9ee1d901725f591cfc09a1a2dc46c1/modules/incanter-core/src/incanter/bayes.clj#L88">Source</a>
</div>
</div>
+
</div>
</div>
</div>
@@ -55,19 +55,19 @@
<div id="right-sidebar"></div>
<div id="content-tag"><h1 id="overview">Index of Public Functions and Variables - <span id="header-project">Incanter</span> <span id="header-version">1.4.1</span><span id="header-status-block"> (<span id="header-status">legacy</span>)</span></h1>
This page has an alphabetical index of all the documented functions and variables
-in <span class="project-name-span">Incanter</span>.
+in <span class="project-name-span">Incanter</span>.
<!-- TODO: enable this functionality on github?
-In a narrow browser window, you may want to collapse the sidebar (use the \"<<\" link)
-to get more screen space for the index.
+In a narrow browser window, you may want to collapse the sidebar (use the \"<<\" link)
+to get more screen space for the index.
-->
-
-<div class="shortcuts">
+<p>
+</p><div class="shortcuts">
Shortcuts:<br />
<a href="#A">A</a> <a href="#B">B</a> <a href="#C">C</a> <a href="#D">D</a>
<a href="#E">E</a> <a href="#F">F</a> <a href="#G">G</a> <a href="#H">H</a>
- <a href="#I">I</a> <a href="#J">J</a> <a href="#K">K</a> <a href="#L">L</a>
+ <a href="#I">I</a> <a href="#J">J</a> <a href="#K">K</a> <a href="#L">L</a>
<a href="#M">M</a>
<br />
<a href="#N">N</a> <a href="#O">O</a> <a href="#P">P</a> <a href="#Q">Q</a>
@@ -66,6 +66,9 @@ <h1 class="nopad">Table of Contents</h1>
</div><div class="toc-section" style="margin-left: 1em;">
<a style="margin-top: 3px;" href="#"></a>
+ </div><div class="toc-section" style="margin-left: 1em;">
+ <a style="margin-top: 3px;" href="#"></a>
+
</div>
</div>
</div>
@@ -86,6 +89,7 @@ <h1 class="nopad">Table of Contents</h1>
+
</div>
</div>
</div>
@@ -78,6 +78,9 @@ <h1 class="nopad">Table of Contents</h1>
<a href="#incanter.bayes/sample-proportions" class="toc-entry-anchor">sample-proportions</a>
</div>
+ </div><div class="toc-section" style="margin-left: 1em;">
+ <a style="margin-top: 3px;" href="#"></a>
+
</div>
</div>
</div>
@@ -108,7 +111,6 @@ <h2 id="incanter.bayes/sample-model-params">sample-model-params</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (sample-model-params size {:keys [x y coefs residuals]})
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> Returns a sample of the given size of the the parameters (coefficients and
error variance) of the given linear-model. The sample is generated using
Gibbs sampling.
@@ -140,6 +142,7 @@ <h2 id="incanter.bayes/sample-model-params">sample-model-params</h2>
;; show the 95% bayesian confidence interval for the first coefficient
(quantile (sel (:coefs param-samp) :cols 0) :probs [0.025 0.975])</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/47d21afb39a5e4075efd783a958c295990085d9d/modules/incanter-core/src/incanter/bayes.clj#L35">Source</a>
@@ -150,7 +153,6 @@ <h2 id="incanter.bayes/sample-multinomial-params">sample-multinomial-params</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (sample-multinomial-params size counts)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> Returns a sample of multinomial proportion parameters.
The counts are assumed to have a multinomial distribution.
A uniform prior distribution is assigned to the multinomial vector
@@ -178,6 +180,7 @@ <h2 id="incanter.bayes/sample-multinomial-params">sample-multinomial-params</h2>
;; view a histogram of the difference in proportions between the first
;; two candidates
(view (histogram (minus (sel samp-props :cols 0) (sel samp-props :cols 1))))</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/47d21afb39a5e4075efd783a958c295990085d9d/modules/incanter-core/src/incanter/bayes.clj#L95">Source</a>
@@ -188,7 +191,6 @@ <h2 id="incanter.bayes/sample-mvn-params">sample-mvn-params</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (sample-mvn-params size y &amp; options)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr">Returns samples of means (sampled from an mvn distribution) and vectorized covariance
matrices (sampled from an inverse-wishart distribution) for the given mvn data.
@@ -231,6 +233,7 @@ <h2 id="incanter.bayes/sample-mvn-params">sample-mvn-params</h2>
</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/47d21afb39a5e4075efd783a958c295990085d9d/modules/incanter-core/src/incanter/bayes.clj#L133">Source</a>
@@ -241,14 +244,15 @@ <h2 id="incanter.bayes/sample-proportions">sample-proportions</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (sample-proportions size counts)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> sample-proportions has been renamed sample-multinomial-params</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/47d21afb39a5e4075efd783a958c295990085d9d/modules/incanter-core/src/incanter/bayes.clj#L88">Source</a>
</div>
</div>
+
</div>
</div>
</div>
@@ -87,6 +87,9 @@ <h1 class="nopad">Table of Contents</h1>
<a href="#incanter.censored/truncated-variance" class="toc-entry-anchor">truncated-variance</a>
</div>
+ </div><div class="toc-section" style="margin-left: 1em;">
+ <a style="margin-top: 3px;" href="#"></a>
+
</div>
</div>
</div>
@@ -115,9 +118,9 @@ <h2 id="incanter.censored/censored-mean-lower">censored-mean-lower</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (censored-mean-lower a mu sigma)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> Returns the mean of a normal distribution (with mean mu and standard
deviation sigma) with the lower tail censored at 'a'</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/a5d2d5afca3244cc534f6d3b426850f5418473c1/modules/incanter-core/src/incanter/censored.clj#L56">Source</a>
@@ -128,10 +131,10 @@ <h2 id="incanter.censored/censored-mean-two-sided">censored-mean-two-sided</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (censored-mean-two-sided a b mu sigma)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> Returns the mean of a normal distribution (with mean mu and standard
deviation sigma) with the lower tail censored at 'a' and the upper
tail censored at 'b'</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/a5d2d5afca3244cc534f6d3b426850f5418473c1/modules/incanter-core/src/incanter/censored.clj#L21">Source</a>
@@ -142,9 +145,9 @@ <h2 id="incanter.censored/censored-mean-upper">censored-mean-upper</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (censored-mean-upper b mu sigma)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> Returns the mean of a normal distribution (with mean mu and standard
deviation sigma) with the upper tail censored at 'b'</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/a5d2d5afca3244cc534f6d3b426850f5418473c1/modules/incanter-core/src/incanter/censored.clj#L84">Source</a>
@@ -155,9 +158,9 @@ <h2 id="incanter.censored/censored-variance-lower">censored-variance-lower</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (censored-variance-lower a mu sigma)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> Returns the variance of a normal distribution (with mean mu and standard
deviation sigma) with the lower tail censored at 'a'</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/a5d2d5afca3244cc534f6d3b426850f5418473c1/modules/incanter-core/src/incanter/censored.clj#L67">Source</a>
@@ -168,10 +171,10 @@ <h2 id="incanter.censored/censored-variance-two-sided">censored-variance-two-sid
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (censored-variance-two-sided a b mu sigma)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> Returns the variance of a normal distribution (with mean mu and standard
deviation sigma) with the lower tail censored at 'a' and the upper
tail censored at 'b'</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/a5d2d5afca3244cc534f6d3b426850f5418473c1/modules/incanter-core/src/incanter/censored.clj#L36">Source</a>
@@ -182,9 +185,9 @@ <h2 id="incanter.censored/censored-variance-upper">censored-variance-upper</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (censored-variance-upper b mu sigma)
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> Returns the variance of a normal distribution (with mean mu and standard
deviation sigma) with the upper tail censored at 'b'</pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/a5d2d5afca3244cc534f6d3b426850f5418473c1/modules/incanter-core/src/incanter/censored.clj#L94">Source</a>
@@ -195,7 +198,6 @@ <h2 id="incanter.censored/truncated-variance">truncated-variance</h2>
<span id="var-type">function</span><br />
<pre id="var-usage">Usage: (truncated-variance &amp; {:keys [mean sd a b], :or {mean 0, sd 1, a NEGATIVE_INFINITY, b POSITIVE_INFINITY}})
</pre>
- <pre id="var-specs"></pre>
<pre id="var-docstr"> Returns the variance of a normal distribution truncated at a and b.
Options:
@@ -227,12 +229,14 @@ <h2 id="incanter.censored/truncated-variance">truncated-variance</h2>
Wiley-IEEE.
<a href="http://en.wikipedia.org/wiki/Truncated_normal_distribution">http://en.wikipedia.org/wiki/Truncated_normal_distribution</a></pre>
+ <pre id="var-specs"></pre>
<a id="var-source" href="https://github.com/incanter/incanter/blob/a5d2d5afca3244cc534f6d3b426850f5418473c1/modules/incanter-core/src/incanter/censored.clj#L111">Source</a>
</div>
</div>
+
</div>
</div>
</div>
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