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@indralab

INDRA Labs

INDRA Labs is part of the Harvard Program in Therapeutic Science (http://hits.harvard.edu), see also http://github.com/sorgerlab

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  1. emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 6 9

  2. indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the dat…

    Python 7 8

  3. gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 11 6

  4. Map amino acid sites of post-translational modifications from models or data to reference positions.

    Python 3 8

  5. adeft Public

    Tool for disambiguating acronyms and abbreviations in text for NLP applications

    Python 14 9

  6. INDRA World Modelers services

    Python 2 3

Repositories

  • indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.

    Python 7 GPL-3.0 8 3 3 Updated Dec 9, 2021
  • indralab.github.io Public

    INDRA projects website

    JavaScript 1 2 0 0 Updated Dec 8, 2021
  • emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 6 BSD-2-Clause 9 0 3 Updated Dec 7, 2021
  • pybiopax Public
    Jupyter Notebook 6 BSD-2-Clause 2 1 3 Updated Dec 7, 2021
  • go_networks Public

    INDRA-assembled networks of mechanisms between genes sets corresponding to GO terms

    Python 0 1 0 1 Updated Nov 20, 2021
  • indra_network_search Public

    REST API for querying the network of biochemical mechanisms in the INDRA DB.

    Python 0 BSD-2-Clause 2 8 0 Updated Nov 15, 2021
  • adeft_indra Public

    Build Adeft models with content from the INDRA Database

    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Nov 12, 2021
  • indra_db_lite Public

    Work with content from indra_db in a local sqlite database.

    Python 0 BSD-2-Clause 2 0 0 Updated Nov 12, 2021
  • opaque Public

    Outlier Prevalence Analysis for Quantification of Unknown Entities

    Python 0 BSD-2-Clause 1 0 0 Updated Nov 12, 2021
  • indra_reading Public

    Tools used for large scale reading, mostly using AWS Batch.

    Python 0 5 0 1 Updated Nov 10, 2021

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