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Commits on Aug 24, 2015
  1. + update the version to 0.9.2

      - this version changes addresses Mac OS X (version 10.10) endian setup issue.
    committed Aug 24, 2015
  2. + update endian definitions for Mac OSX

      - it appears (at least from OS X verison 10.10, Yosemite) that the
        big and little endian defintions have changed.
    
        the older
    
           #include <sys/_endian.h>
           #include <architecture/byte_order.h>
    
        reference yielded the following warning:
    
           ./sff.h:42:30: note: expanded from macro '__bswap_16'
             #define __bswap_16(x)      NXSwapShort(x)
                                        ^
           /usr/include/architecture/byte_order.h:45:1: note: 'NXSwapShort' has been explicitly marked deprecated here
    
        For the new OS X editions, it seems that we need to refer to:
    
          #include <netinet/in.h>
          #include <libkern/OSByteOrder.h>
    
        and respectively use 'OSSwapInt16', 'OSSwapInt32', & 'OSSwapInt64', in
        place of 'NXSwapShort', 'NXSwapLong' & 'NXSwapLongLong'.
    committed Aug 24, 2015
  3. + update the version to 0.9.1

      - this version changes addresses the Makefile building issue:
    
        #3
    committed Aug 24, 2015
  4. + update Makefile for newer Linux distributions

      - it appears that the __USE_BSD C preprocessor DEFINE directive must
        be added to get the BSD type little and big endian functions to
        work.
    
        This change addresses issue:
    
        #3
    committed Aug 24, 2015
Commits on Nov 12, 2013
  1. + update the version to 0.9.0

      - these reflect the changes to handle:
         * stdin input
         * handle zero length reads
           (may occur after trimming and/or de-multiplexing)
    committed Nov 12, 2013
  2. + update contributor list

    committed Nov 12, 2013
  3. + update README (convert to Markdown)

      - convert to proper Markdown format
      - include new stdin reading feature
      - include contributors
    committed Nov 12, 2013
Commits on Oct 23, 2013
Commits on May 11, 2012
Commits on Mar 26, 2010
  1. + mention some addition details in the README.

      - installation instructions on Linux distributions from 2008 or earlier.
      - state the default trimming performed
      - the kind of FASTQ format produced by the program
    committed Mar 26, 2010
Commits on Mar 25, 2010
  1. + minor READ fixup

    committed Mar 25, 2010
  2. + removal of extraneous debugging print statements

      - just a general code cleanup here
    committed Mar 25, 2010
  3. + be pedantic about the function declaration formatting in main.c

      - use the same format approach as in sff.c
    committed Mar 25, 2010
  4. + refactoring: movement of sff specific functions from main.c to sff.c

      - the functions identifying clipping points, fetching base strings, and
        quality array information from a read seemed more related to sff file
        specific features.
    committed Mar 25, 2010
  5. + adjust error messages

      - ensure that they are all getting written to standard error (stderr)
      - adjust some error message statements about reading and writing files
    committed Mar 25, 2010
Commits on Mar 24, 2010
  1. + Makefile correction

      - ensure that the dependencies on 'make genome' are correct.
    committed Mar 24, 2010
  2. + more README fixups

    committed Mar 24, 2010
Commits on Mar 23, 2010
  1. + minor README updates

    committed Mar 23, 2010
  2. + addition of a README file

    committed Mar 23, 2010
Commits on Mar 15, 2010
  1. + fix typo in the Makefile

    committed Mar 15, 2010
Commits on Dec 22, 2009
  1. + Makefile adjustments

      - addition of a 'make genome' option.  This is helpful
        when compiling the code on the current workstations at
        The Genome Center at Washingtion University.
    committed Dec 22, 2009
Commits on Oct 4, 2009
  1. + addition of genome center linux image alterations

      - specification of a __GENOME__ flag in the Makefile
      - addition of a specialized endian.h to use with the __GENOME__
        flag if defined
    committed Oct 4, 2009
Commits on Sep 29, 2009
  1. + further work

       - more work flushing out the options (help and version)
       - handling of the default case of printing output to stdout
       - commenting out various debug print statements
    committed Sep 29, 2009
  2. + initial getopt setup

    committed Sep 28, 2009