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BacteriaTracking2.fig
BacteriaTracking2.m
IMAGEJ_Multi.docx
IMAGEJ_Multi2.docx
Nano_TrackingBis.java
Nano_TrackingBis_orig.java
README.txt
mij.jar
mtlb_thresholding.m
plotpillarfiles2.m
plotpillars.m
singleCelltest.avi

README.txt

---- README ------

THE FOLLOWING TWO FILES MUST BE PLACED IN THE MATLAB JAVA DIRECTORY
C:\Matlab\Java...
1. ij.jar
2. mij.jar 

THE FOLLOWING TWO FILES MUST BE PLACED IN THE IMAGEJ PLUGINS DIRECTORY
C:\Program Files\ImageJ\plugins\Analyze
1. Nano_TrackingBis_orig.java
2. Nano_TrackingBis.java









--NOTES--
1. Memory limit in matlab imageJ:
http://imagej.1557.x6.nabble.com/increasing-memory-allocation-via-Java-code-td3689982.html


2. Save tif stack in matlab failure: 
http://blogs.mathworks.com/steve/2010/11/09/the-mystery-of-the-failing-tiff-append-loop/

Error using imwrite (line 455)
Unable to open file "C:\Users\Nicolas\Desktop\ONLY_BACTRACK_DATA\test2\WT30sThree_BW.tif" for
writing.  You may not have write permission.

tldr; Make sure all windows explorer windows are closed!