Semi-Automated Quantitative Trait Genome-Wide Association Studies
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README.md
SAQT_GWAS_Documentation.pdf
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README.md

SAQT-GWAS

Semi-Automated Quantitative Trait Genome-Wide Association Studies

The SAQT-GWAS approach consists of a LONI Pipeline workflow and a collection of R functions that together allow a user to quickly and easily conduct GWAS on thousands of different quantitative traits simultaneously and subsequently visualize the results.

Features

  • Fast – 100s of QT-GWAS in ~10 minutes on the LONI cluster
  • Flexible – use any set of quantitative traits as inputs
  • Customizable – GWAS settings easily adjustable
  • Simple – interrogate results with provided functions
  • Powerful – enables systems-level exploration of genotype-phenotype associations

Documentation

Documentation is included as a PDF titled SAQT_GWAS_Documentation

More Information

More information can be found at: http://loni.usc.edu/Software/saqtgwas.html

Acknowledgements

This work was in part supported by NIH grants P41EB015922 and U54EB020406.