From 53cb5549ff98d35ca83285b1ea3125d44e39451b Mon Sep 17 00:00:00 2001
From: shajoezhu <sha.joe.zhu@gmail.com>
Date: Fri, 25 Oct 2024 17:00:54 +0800
Subject: [PATCH 1/5] rm staged deps

---
 staged_dependencies.yaml | 38 --------------------------------------
 1 file changed, 38 deletions(-)
 delete mode 100644 staged_dependencies.yaml

diff --git a/staged_dependencies.yaml b/staged_dependencies.yaml
deleted file mode 100644
index 0c5ef5ab..00000000
--- a/staged_dependencies.yaml
+++ /dev/null
@@ -1,38 +0,0 @@
-current_repo:
-  repo: insightsengineering/formatters
-  host: https://github.com
-upstream_repos: {}
-downstream_repos:
-  insightsengineering/rlistings:
-    repo: insightsengineering/rlistings
-    host: https://github.com
-  insightsengineering/rtables:
-    repo: insightsengineering/rtables
-    host: https://github.com
-  insightsengineering/tern:
-    repo: insightsengineering/tern
-    host: https://github.com
-  insightsengineering/tern.gee:
-    repo: insightsengineering/tern.gee
-    host: https://github.com
-  insightsengineering/tern.mmrm:
-    repo: insightsengineering/tern.mmrm
-    host: https://github.com
-  insightsengineering/tern.rbmi:
-    repo: insightsengineering/tern.rbmi
-    host: https://github.com
-  insightsengineering/teal.osprey:
-    repo: insightsengineering/teal.osprey
-    host: https://github.com
-  insightsengineering/teal.modules.clinical:
-    repo: insightsengineering/teal.modules.clinical
-    host: https://github.com
-  insightsengineering/chevron:
-    repo: insightsengineering/chevron
-    host: https://github.com
-  insightsengineering/citril:
-    repo: insightsengineering/citril
-    host: https://github.com
-  insightsengineering/scda.test:
-    repo: insightsengineering/scda.test
-    host: https://github.com

From c170ac023b2e70b3f605d573a43a1e750440bb34 Mon Sep 17 00:00:00 2001
From: shajoezhu <sha.joe.zhu@gmail.com>
Date: Fri, 25 Oct 2024 22:03:54 +0800
Subject: [PATCH 2/5] updat echeck list

---
 .github/workflows/check.yaml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml
index 90d4c1d1..e4df8f93 100644
--- a/.github/workflows/check.yaml
+++ b/.github/workflows/check.yaml
@@ -40,6 +40,7 @@ jobs:
         checking top-level files .* NOTE
       unit-test-report-brand: >-
         https://raw.githubusercontent.com/insightsengineering/hex-stickers/main/thumbs/formatters.png
+      deps-installation-method: setup-r-dependencies
   r-cmd-non-cran:
     name: R CMD Check (non-CRAN) 🧬
     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
@@ -60,6 +61,7 @@ jobs:
         checking Rd .usage sections .* NOTE
         checking for unstated dependencies in vignettes .* NOTE
         checking top-level files .* NOTE
+      deps-installation-method: setup-r-dependencies
   coverage:
     name: Coverage 📔
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
@@ -68,6 +70,7 @@ jobs:
     with:
       additional-env-vars: |
         NOT_CRAN=true
+      deps-installation-method: setup-r-dependencies
   linter:
     if: github.event_name != 'push'
     name: SuperLinter 🦸‍♀️
@@ -78,6 +81,7 @@ jobs:
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
     with:
+      deps-installation-method: setup-r-dependencies
       auto-update: true
   gitleaks:
     name: gitleaks 💧
@@ -108,6 +112,7 @@ jobs:
     name: Style Check 👗
     uses: insightsengineering/r.pkg.template/.github/workflows/style.yaml@main
     with:
+      deps-installation-method: setup-r-dependencies
       auto-update: true
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}

From 8eaccbb85d92637fb1ad0480f466c4a523921dcb Mon Sep 17 00:00:00 2001
From: shajoezhu <sha.joe.zhu@gmail.com>
Date: Fri, 25 Oct 2024 22:13:23 +0800
Subject: [PATCH 3/5] Empty-Commit


From bc980b250d5cc45156a4fbc8629858095af4cf3a Mon Sep 17 00:00:00 2001
From: shajoezhu <sha.joe.zhu@gmail.com>
Date: Fri, 25 Oct 2024 22:13:35 +0800
Subject: [PATCH 4/5] Empty-Commit


From e737181b05509b2dc5b74191bc7bdad42d89be4b Mon Sep 17 00:00:00 2001
From: shajoezhu <sha.joe.zhu@gmail.com>
Date: Fri, 25 Oct 2024 22:20:24 +0800
Subject: [PATCH 5/5] update

---
 .github/workflows/check.yaml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml
index e4df8f93..95c7bd10 100644
--- a/.github/workflows/check.yaml
+++ b/.github/workflows/check.yaml
@@ -112,7 +112,6 @@ jobs:
     name: Style Check 👗
     uses: insightsengineering/r.pkg.template/.github/workflows/style.yaml@main
     with:
-      deps-installation-method: setup-r-dependencies
       auto-update: true
     secrets:
       REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}