From cebead2063f09a9342a07584e6d8cc983f6122a2 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Thu, 12 Sep 2024 12:09:19 +0200
Subject: [PATCH 1/6] feat: set custom repositories

---
 action.yaml | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

diff --git a/action.yaml b/action.yaml
index 00ea841..677ff45 100644
--- a/action.yaml
+++ b/action.yaml
@@ -346,6 +346,20 @@ runs:
     shell: bash
     run: rm utils.R
 
+  - name: Set repositories
+    run: |
+      cat > ${HOME}/.Rprofile <<EOF
+      options(
+        repos = c(
+          RSPM = "https://packagemanager.posit.co/cran/__linux__/jammy/latest",
+          CRAN = "https://packagemanager.posit.co/cran/__linux__/jammy/latest"
+        )
+      )
+      EOF
+      echo "Repositories written to ${HOME}/.Rprofile:"
+      cat ${HOME}/.Rprofile
+    shell: bash
+
   - uses: r-lib/actions/setup-r-dependencies@v2
     if: ${{ inputs.skip-install == 'false' }}
     with:

From 393bad3410ba5e716ce98c1b75df3c6cd5854eb6 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Thu, 12 Sep 2024 12:58:54 +0200
Subject: [PATCH 2/6] chore: try noble instead of jammy

---
 action.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/action.yaml b/action.yaml
index 677ff45..80306ee 100644
--- a/action.yaml
+++ b/action.yaml
@@ -351,8 +351,8 @@ runs:
       cat > ${HOME}/.Rprofile <<EOF
       options(
         repos = c(
-          RSPM = "https://packagemanager.posit.co/cran/__linux__/jammy/latest",
-          CRAN = "https://packagemanager.posit.co/cran/__linux__/jammy/latest"
+          RSPM = "https://packagemanager.posit.co/cran/__linux__/noble/latest",
+          CRAN = "https://packagemanager.posit.co/cran/__linux__/noble/latest"
         )
       )
       EOF

From d52824e4a407c202ac8487da8f1dcf4ff05cf9e5 Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Thu, 12 Sep 2024 13:04:36 +0200
Subject: [PATCH 3/6] chore: try focal instead of noble

---
 action.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/action.yaml b/action.yaml
index 80306ee..1dd33c2 100644
--- a/action.yaml
+++ b/action.yaml
@@ -351,8 +351,8 @@ runs:
       cat > ${HOME}/.Rprofile <<EOF
       options(
         repos = c(
-          RSPM = "https://packagemanager.posit.co/cran/__linux__/noble/latest",
-          CRAN = "https://packagemanager.posit.co/cran/__linux__/noble/latest"
+          RSPM = "https://packagemanager.posit.co/cran/__linux__/focal/latest",
+          CRAN = "https://packagemanager.posit.co/cran/__linux__/focal/latest"
         )
       )
       EOF

From e1d046dedd9d9d45cf14e38edd784f86c6f7721b Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Thu, 12 Sep 2024 13:18:30 +0200
Subject: [PATCH 4/6] chore: restore jammy

---
 action.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/action.yaml b/action.yaml
index 1dd33c2..677ff45 100644
--- a/action.yaml
+++ b/action.yaml
@@ -351,8 +351,8 @@ runs:
       cat > ${HOME}/.Rprofile <<EOF
       options(
         repos = c(
-          RSPM = "https://packagemanager.posit.co/cran/__linux__/focal/latest",
-          CRAN = "https://packagemanager.posit.co/cran/__linux__/focal/latest"
+          RSPM = "https://packagemanager.posit.co/cran/__linux__/jammy/latest",
+          CRAN = "https://packagemanager.posit.co/cran/__linux__/jammy/latest"
         )
       )
       EOF

From 10f417ef9670a156efe60e1cfdcfcb8a593a77e6 Mon Sep 17 00:00:00 2001
From: walkowif <59475134+walkowif@users.noreply.github.com>
Date: Thu, 12 Sep 2024 15:34:39 +0200
Subject: [PATCH 5/6] fix: get ubuntu release name from lsb_release

Co-authored-by: cicdguy <26552821+cicdguy@users.noreply.github.com>
Signed-off-by: walkowif <59475134+walkowif@users.noreply.github.com>
---
 action.yaml | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/action.yaml b/action.yaml
index 677ff45..85538ce 100644
--- a/action.yaml
+++ b/action.yaml
@@ -348,11 +348,12 @@ runs:
 
   - name: Set repositories
     run: |
+      OS_CODENAME=$(lsb_release --codename --short)
       cat > ${HOME}/.Rprofile <<EOF
       options(
         repos = c(
-          RSPM = "https://packagemanager.posit.co/cran/__linux__/jammy/latest",
-          CRAN = "https://packagemanager.posit.co/cran/__linux__/jammy/latest"
+          RSPM = "https://packagemanager.posit.co/cran/__linux__/${OS_CODENAME}/latest",
+          CRAN = "https://packagemanager.posit.co/cran/__linux__/${OS_CODENAME}/latest"
         )
       )
       EOF

From 531fdf256738d6fb2797a84f04e444f63057b6bb Mon Sep 17 00:00:00 2001
From: Franciszek Walkowiak <franciszek.walkowiak@roche.com>
Date: Thu, 12 Sep 2024 15:35:49 +0200
Subject: [PATCH 6/6] fix: pipe lsb_release to tail

---
 action.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/action.yaml b/action.yaml
index 85538ce..9dc5eca 100644
--- a/action.yaml
+++ b/action.yaml
@@ -348,7 +348,7 @@ runs:
 
   - name: Set repositories
     run: |
-      OS_CODENAME=$(lsb_release --codename --short)
+      OS_CODENAME=$(lsb_release --codename --short | tail)
       cat > ${HOME}/.Rprofile <<EOF
       options(
         repos = c(