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IBL Python Libraries

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Description

Library used to implement the International Brain Laboratory data pipeline. Currently in active development. The library as currently 4 main modules:

  • brainbox: neuroscience analysis oriented library
  • ibllib: general purpose library containing I/O, signal processing and IBL data pipelines utilities.
  • oneibl: interface to the Alyx database of experiments to access IBL data.
  • alf: implementation of ALF file naming convention

Release Notes here

Requirements

OS: Deployed on Linux and Windows. Minimally tested for Mac.

Python Module: Python 3.7 or higher, we develop on 3.8.

Installation, documentation and examples

https://docs.internationalbrainlab.org

Contribution and development practices

See https://int-brain-lab.github.io/iblenv/07_contribution.html

We use gitflow and Semantic Versioning.

Before commiting to your branch:

  • run tests
  • flake8 This is also enforced by continuous integration.

Matlab Library

The Matlab library has moved to its own repository here: https://github.com/int-brain-lab/ibllib-matlab/