["cellxgene.ms_nature_2019_rowitch_filtered_normalized_log1p_non_scaled_with_embedings_and_labels",[{">Description":{"Human brain snRNAseq 46k cells (MS Nature 2019 Schirmer et al.); data - normalized, log transformed UMI; platform - 10X v2 chemistry | embedding by umap_harmony; color by cell_type":"Human brain snRNAseq 46k cells (MS Nature 2019 Schirmer et al.); data - normalized, log transformed UMI; platform - 10X v2 chemistry | embedding by umap_harmony; color by cell_type"},"Capbatch":{"CAP1":"CAP1","CAP2":"CAP2","CAP3":"CAP3","CAP4":"CAP4","CAP5":"CAP5","CAP6":"CAP6","CAP7":"CAP7","nan":"nan"},"Seqbatch":{"SEQ1":"SEQ1","SEQ2":"SEQ2","SEQ3":"SEQ3","SEQ4":"SEQ4","SEQ5":"SEQ5","nan":"nan"},"cell_type":{"Astrocytes":"Astrocytes","B cells":"B cells","EN-L2-3":"EN-L2-3","EN-L4":"EN-L4","EN-L5-6":"EN-L5-6","EN-MIX":"EN-MIX","EN-PYR":"EN-PYR","Endo cells":"Endo cells","Glia-MIX":"Glia-MIX","IN-PVALB":"IN-PVALB","IN-SST":"IN-SST","IN-SV2C":"IN-SV2C","IN-VIP":"IN-VIP","Microglia":"Microglia","OL":"OL","OPC":"OPC","Phagocytes":"Phagocytes","Stromal cells":"Stromal cells","T cells":"T cells","nan":"nan"},"diagnosis":{"Control":"Control","MS":"MS","nan":"nan"},"louvain_harmony":{"0":"0","1":"1","2":"2","3":"3","4":"4","5":"5","6":"6","7":"7","8":"8","9":"9","10":"10","11":"11","12":"12","13":"13","14":"14","15":"15","16":"16","17":"17","18":"18","19":"19","20":"20","21":"21","22":"22","23":"23","24":"24","25":"25","26":"26"},"louvain_liger":{"0":"0","1":"1","2":"2","3":"3","4":"4","5":"5","6":"6","7":"7","8":"8","9":"9","10":"10","11":"11","12":"12","13":"13","14":"14","15":"15","16":"16","17":"17","18":"18","19":"19","20":"20","21":"21","22":"22"},"region":{"motor-premotor":"motor-premotor","parietal":"parietal","prefrontal":"prefrontal","temporal":"temporal","nan":"nan"},"sample":{"C1":"C1","C2":"C2","C3":"C3","C4":"C4","C5":"C5","C6":"C6","C7":"C7","C8":"C8","C9":"C9","MS1":"MS1","MS10":"MS10","MS11":"MS11","MS12":"MS12","MS2":"MS2","MS3":"MS3","MS4":"MS4","MS5":"MS5","MS6":"MS6","MS7":"MS7","MS8":"MS8","MS9":"MS9","nan":"nan"},"sex":{"female":"female","male":"male","nan":"nan"},"stage":{"Acute/Chronic active":"Acute/Chronic active","Chronic inactive":"Chronic inactive","Control":"Control","nan":"nan"}},{},["Capbatch","Seqbatch","cell_type","diagnosis","louvain_harmony","louvain_liger","region","sample","sex","stage"]],[["CD3E","CD4"],{}],{"scale":"Yes","scaleZero":"No","clipValue":"Yes","scaleMax":20,"dpi":150,"img":"png","fontsize":16,"vectorFriendly":"Yes","transparent":"No","scanpybranch":"split_show","colorMap":"viridis"},[{"celllist1":{"0":30,"1":109,"2":320,"3":337,"4":352,"5":429,"6":461,"7":522,"8":588,"9":659,"10":757,"11":782,"12":816,"13":835,"14":849,"15":864,"16":1229,"17":1282,"18":1346,"19":1388,"20":1477,"21":1572,"22":1592,"23":1659,"24":1880,"25":1958,"26":1998,"27":2060,"28":2063,"29":2082,"30":2101,"31":2109,"32":2117,"33":2176,"34":2182,"35":2183,"36":2226,"37":2260,"38":2301,"39":2330,"40":2335,"41":2352,"42":2446,"43":2514,"44":2554,"45":2694,"46":2766,"47":2816,"48":2819,"49":2847,"50":2908,"51":2949,"52":3103,"53":3134,"54":3206,"55":3260,"56":3533,"57":3583,"58":3599,"59":3621,"60":3671,"61":3682,"62":3914,"63":3917,"64":3918,"65":3933,"66":3989,"67":4009,"68":4031,"69":4093,"70":4096,"71":4103,"72":4122,"73":4132,"74":4175,"75":4306,"76":4396,"77":4415,"78":4421,"79":4477,"80":4525,"81":4569,"82":4602,"83":4609,"84":4660,"85":4725,"86":4897,"87":4900,"88":4912,"89":5122,"90":5142,"91":5144,"92":5156,"93":5170,"94":5190,"95":5272,"96":5341,"97":5342,"98":5377,"99":5460,"100":5490,"101":5503,"102":5521,"103":5653,"104":5717,"105":5750,"106":5754,"107":5782,"108":5808,"109":5920,"110":5931,"111":5947,"112":6015,"113":6050,"114":6131,"115":6273,"116":6277,"117":6311,"118":6324,"119":6342,"120":6364,"121":6458,"122":6498,"123":6541,"124":6608,"125":6720,"126":6783,"127":6817,"128":6877,"129":6956,"130":7049,"131":7087,"132":7127,"133":7222,"134":7330,"135":7406,"136":7409,"137":7469,"138":7480,"139":7539,"140":7653,"141":7720,"142":7729,"143":7752,"144":7813,"145":7823,"146":7918,"147":8024,"148":8045,"149":8086,"150":8109,"151":8253,"152":8260,"153":8306,"154":8354,"155":8371,"156":8447,"157":8487,"158":8736,"159":8765,"160":8929,"161":8931,"162":8991,"163":9009,"164":9072,"165":9185,"166":9210,"167":9240,"168":9284,"169":9533,"170":9541,"171":9564,"172":9812,"173":9868,"174":9871,"175":9905,"176":9920,"177":9949,"178":9966,"179":10068,"180":10128,"181":10180,"182":10186,"183":10221,"184":10231,"185":10248,"186":10252,"187":10304,"188":10340,"189":10361,"190":10387,"191":10506,"192":10568,"193":10635,"194":10858,"195":10916,"196":10938,"197":11059,"198":11082,"199":11138,"200":11155,"201":11253,"202":11266,"203":11293,"204":11347,"205":11350,"206":11376,"207":11389,"208":11423,"209":11428,"210":11471,"211":11576,"212":11623,"213":11650,"214":11679,"215":11731,"216":11736,"217":11844,"218":11992,"219":12077,"220":12132,"221":12207,"222":12323,"223":12397,"224":12402,"225":12510,"226":12527,"227":12534,"228":12591,"229":12637,"230":12717,"231":12788,"232":12794,"233":12844,"234":12861,"235":13072,"236":13123,"237":13145,"238":13185,"239":13216,"240":13244,"241":13262,"242":13283,"243":13406,"244":13460,"245":13461,"246":13488,"247":13531,"248":13539,"249":13666,"250":13784,"251":13805,"252":14053,"253":14097,"254":14153,"255":14393,"256":14403,"257":14426,"258":14470,"259":14471,"260":14503,"261":14508,"262":14543,"263":14553,"264":14573,"265":14636,"266":14688,"267":14735,"268":14797,"269":14945,"270":15073,"271":15074,"272":15094,"273":15095,"274":15163,"275":15269,"276":15289,"277":15378,"278":15461,"279":15476,"280":15585,"281":15624,"282":15655,"283":15674,"284":15692,"285":15737,"286":15771,"287":15892,"288":15894,"289":15921,"290":16022,"291":16024,"292":16067,"293":16092,"294":16110,"295":16202,"296":16221,"297":16315,"298":16321,"299":16391,"300":16519,"301":16562,"302":16628,"303":16629,"304":16745,"305":16757,"306":16883,"307":16886,"308":16976,"309":17037,"310":17223,"311":17234,"312":17275,"313":17291,"314":17327,"315":17329,"316":17468,"317":17591,"318":17666,"319":17734,"320":17738,"321":17813,"322":17911,"323":17925,"324":18021,"325":18137,"326":18159,"327":18227,"328":18340,"329":18404,"330":18418,"331":18441,"332":18525,"333":18659,"334":18715,"335":18728,"336":18766,"337":18871,"338":18903,"339":18941,"340":19029,"341":19034,"342":19102,"343":19213,"344":19239,"345":19240,"346":19249,"347":19294,"348":19304,"349":19309,"350":19465,"351":19572,"352":19615,"353":19635,"354":19644,"355":19687,"356":19707,"357":19724,"358":19771,"359":19806,"360":19836,"361":19870,"362":19874,"363":19875,"364":19887,"365":20009,"366":20073,"367":20081,"368":20091,"369":20094,"370":20095,"371":20155,"372":20294,"373":20434,"374":20454,"375":20528,"376":20638,"377":20806,"378":20811,"379":20858,"380":20892,"381":20932,"382":20933,"383":21099,"384":21127,"385":21141,"386":21169,"387":21172,"388":21245,"389":21257,"390":21278,"391":21436,"392":21558,"393":21592,"394":21674,"395":21745,"396":21808,"397":21976,"398":21989,"399":22011,"400":22025,"401":22099,"402":22110,"403":22136,"404":22171,"405":22303,"406":22343,"407":22361,"408":22396,"409":22577,"410":22581,"411":22685,"412":22790,"413":22953,"414":22983,"415":23011,"416":23042,"417":23057,"418":23097,"419":23134,"420":23165,"421":23189,"422":23217,"423":23269,"424":23306,"425":23328,"426":23362,"427":23463,"428":23511,"429":23696,"430":23741,"431":23765,"432":23808,"433":23829,"434":23831,"435":23917,"436":24051,"437":24153,"438":24254,"439":24322,"440":24328,"441":24380,"442":24435,"443":24441,"444":24449,"445":24534,"446":24560,"447":24690,"448":24803,"449":24905,"450":24944,"451":25026,"452":25187,"453":25313,"454":25465,"455":25495,"456":25576,"457":25669,"458":25716,"459":25720,"460":25748,"461":25802,"462":25812,"463":26066,"464":26132,"465":26383,"466":26623,"467":26686,"468":26706,"469":26849,"470":26921,"471":26926,"472":26990,"473":27000,"474":27023,"475":27025,"476":27037,"477":27156,"478":27218,"479":27240,"480":27241,"481":27267,"482":27282,"483":27348,"484":27416,"485":27421,"486":27449,"487":27497,"488":27645,"489":27699,"490":27713,"491":27723,"492":27803,"493":27806,"494":27858,"495":27897,"496":27913,"497":28213,"498":28241,"499":28328,"500":28428,"501":28460,"502":28560,"503":28913,"504":28955,"505":28976,"506":28984,"507":29024,"508":29038,"509":29141,"510":29154,"511":29217,"512":29247,"513":29278,"514":29283,"515":29309,"516":29345,"517":29405,"518":29426,"519":29434,"520":29504,"521":29523,"522":29630,"523":29644,"524":29683,"525":29828,"526":30007,"527":30036,"528":30070,"529":30071,"530":30136,"531":30200,"532":30258,"533":30260,"534":30291,"535":30321,"536":30496,"537":30554,"538":30560,"539":30695,"540":30697,"541":30782,"542":30862,"543":30893,"544":30915,"545":30945,"546":31457,"547":31476,"548":31598,"549":31613,"550":31648,"551":31693,"552":31713,"553":31752,"554":31787,"555":31931,"556":31964,"557":32105,"558":32177,"559":32218,"560":32520,"561":32639,"562":32772,"563":32982,"564":33062,"565":33129,"566":33248,"567":33282,"568":33285,"569":33409,"570":33421,"571":33422,"572":33481,"573":33511,"574":33526,"575":33528,"576":33565,"577":33644,"578":33691,"579":33786,"580":33866,"581":33881,"582":33937,"583":33952,"584":34027,"585":34122,"586":34123,"587":34152,"588":34185,"589":34198,"590":34210,"591":34262,"592":34391,"593":34553,"594":34582,"595":34604,"596":34756,"597":34857,"598":34935,"599":34962,"600":34987,"601":35166,"602":35178,"603":35319,"604":35331,"605":35419,"606":35440,"607":35460,"608":35476,"609":35481,"610":35543,"611":35592,"612":35651,"613":35665,"614":35747,"615":35764,"616":35802,"617":35988,"618":36042,"619":36161,"620":36178,"621":36187,"622":36192,"623":36231,"624":36266,"625":36378,"626":36479,"627":36515,"628":36568,"629":36578,"630":36595,"631":36603,"632":36604,"633":36764,"634":36775,"635":36910,"636":36994,"637":37020,"638":37021,"639":37026,"640":37112,"641":37117,"642":37190,"643":37304,"644":37344,"645":37376,"646":37385,"647":37446,"648":37464,"649":37483,"650":37535,"651":37538,"652":37618,"653":37778,"654":37794,"655":37843,"656":37851,"657":37874,"658":37903,"659":38005,"660":38016,"661":38050,"662":38066,"663":38084,"664":38091,"665":38124,"666":38193,"667":38200,"668":38231,"669":38306,"670":38387,"671":38542,"672":38564,"673":38582,"674":38619,"675":38780,"676":38924,"677":38995,"678":39028,"679":39056,"680":39162,"681":39341,"682":39404,"683":39412,"684":39618,"685":39774,"686":39885,"687":39951,"688":39964,"689":40009,"690":40130,"691":40186,"692":40281,"693":40347,"694":40433,"695":40567,"696":40578,"697":40693,"698":40735,"699":40743,"700":40879,"701":40901,"702":40925,"703":40969,"704":41029,"705":41051,"706":41071,"707":41085,"708":41095,"709":41203,"710":41206,"711":41265,"712":41278,"713":41401,"714":41472,"715":41475,"716":41495,"717":41604,"718":41638,"719":41661,"720":41765,"721":41895,"722":41913,"723":42014,"724":42027,"725":42047,"726":42133,"727":42145,"728":42274,"729":42278,"730":42363,"731":42388,"732":42618,"733":42746,"734":42766,"735":42796,"736":42904,"737":42976,"738":42989,"739":43052,"740":43067,"741":43089,"742":43188,"743":43229,"744":43236,"745":43260,"746":43327,"747":43399,"748":43425,"749":43525,"750":43613,"751":43615,"752":43679,"753":43681,"754":43748,"755":43756,"756":43904,"757":43912,"758":43971,"759":44020,"760":44028,"761":44032,"762":44072,"763":44078,"764":44180,"765":44219,"766":44314,"767":44334,"768":44355,"769":44401,"770":44466,"771":44491,"772":44566,"773":44580,"774":44595,"775":44613,"776":44650,"777":44704,"778":44721,"779":44819,"780":44975,"781":45040,"782":45097,"783":45155,"784":45197,"785":45329,"786":45360,"787":45379,"788":45516,"789":45684,"790":45974,"791":45984,"792":46087},"celllist2":{"0":29,"1":48,"2":114,"3":192,"4":431,"5":488,"6":523,"7":527,"8":549,"9":568,"10":598,"11":618,"12":635,"13":734,"14":944,"15":1047,"16":1144,"17":1218,"18":1223,"19":1288,"20":1359,"21":1397,"22":1557,"23":1609,"24":1699,"25":1831,"26":2123,"27":2241,"28":2295,"29":2589,"30":2854,"31":2934,"32":3017,"33":3083,"34":3302,"35":3571,"36":3694,"37":3697,"38":3829,"39":3922,"40":3966,"41":3981,"42":4023,"43":4308,"44":4325,"45":4467,"46":4548,"47":4593,"48":4596,"49":4644,"50":4768,"51":4796,"52":4942,"53":5049,"54":5231,"55":5262,"56":5270,"57":5280,"58":5443,"59":5484,"60":5566,"61":5597,"62":5765,"63":5876,"64":6033,"65":6039,"66":6079,"67":6397,"68":6435,"69":6464,"70":6595,"71":6657,"72":6730,"73":6997,"74":7085,"75":7922,"76":8015,"77":8018,"78":8134,"79":8241,"80":8280,"81":8309,"82":8324,"83":8422,"84":8423,"85":8777,"86":8812,"87":8844,"88":8960,"89":9062,"90":9517,"91":9523,"92":9647,"93":9849,"94":9932,"95":10198,"96":10366,"97":10429,"98":10497,"99":10640,"100":10645,"101":10709,"102":10776,"103":10792,"104":10890,"105":10954,"106":10973,"107":11078,"108":11090,"109":11154,"110":11336,"111":11559,"112":11741,"113":11761,"114":11923,"115":11969,"116":12025,"117":12042,"118":12093,"119":12211,"120":12377,"121":12516,"122":12656,"123":12776,"124":12888,"125":13013,"126":13234,"127":13282,"128":13350,"129":13465,"130":13472,"131":13657,"132":13786,"133":13806,"134":13828,"135":13849,"136":13862,"137":14023,"138":14041,"139":14367,"140":14750,"141":14765,"142":15050,"143":15131,"144":15260,"145":15344,"146":15418,"147":15457,"148":15475,"149":15743,"150":15781,"151":15834,"152":15896,"153":16143,"154":16160,"155":16203,"156":16958,"157":17131,"158":17137,"159":17251,"160":17311,"161":17323,"162":17413,"163":17717,"164":17862,"165":17887,"166":18091,"167":18304,"168":18386,"169":18583,"170":18592,"171":18810,"172":18848,"173":18950,"174":18997,"175":19033,"176":19090,"177":19453,"178":19455,"179":19483,"180":19650,"181":19659,"182":20046,"183":20167,"184":20205,"185":20211,"186":20253,"187":20275,"188":20503,"189":20553,"190":20574,"191":20580,"192":20596,"193":20687,"194":20745,"195":20767,"196":21024,"197":21052,"198":21125,"199":21414,"200":21639,"201":21811,"202":22134,"203":22288,"204":22595,"205":22657,"206":22798,"207":22892,"208":22901,"209":22932,"210":23117,"211":23444,"212":23587,"213":23609,"214":23946,"215":23981,"216":24125,"217":24533,"218":24985,"219":25290,"220":25318,"221":25400,"222":25816,"223":25934,"224":25982,"225":26194,"226":26419,"227":26435,"228":26504,"229":26561,"230":26637,"231":26662,"232":26675,"233":26711,"234":26755,"235":26800,"236":26905,"237":27066,"238":27203,"239":27249,"240":27272,"241":27367,"242":27440,"243":27681,"244":27702,"245":27734,"246":27796,"247":27883,"248":27906,"249":27910,"250":28015,"251":28107,"252":28128,"253":28202,"254":28315,"255":28918,"256":29229,"257":29260,"258":29265,"259":29317,"260":29392,"261":29987,"262":30220,"263":30225,"264":30415,"265":30453,"266":30643,"267":30757,"268":30838,"269":30865,"270":31021,"271":31024,"272":31048,"273":31335,"274":31496,"275":31637,"276":31754,"277":32111,"278":32140,"279":32157,"280":32291,"281":32306,"282":32386,"283":32498,"284":32849,"285":32910,"286":33038,"287":33376,"288":33662,"289":33696,"290":33828,"291":34033,"292":34300,"293":34763,"294":34799,"295":34809,"296":34853,"297":35006,"298":35074,"299":35163,"300":35287,"301":35662,"302":35679,"303":35721,"304":35762,"305":35978,"306":35997,"307":36023,"308":36160,"309":36379,"310":36422,"311":36630,"312":36828,"313":37048,"314":37053,"315":37110,"316":37160,"317":37288,"318":37355,"319":37443,"320":37632,"321":37684,"322":37906,"323":38113,"324":38147,"325":38287,"326":38289,"327":38609,"328":38670,"329":38843,"330":39052,"331":39279,"332":39667,"333":39762,"334":39766,"335":39780,"336":39842,"337":39880,"338":40043,"339":40165,"340":40223,"341":40489,"342":40571,"343":40868,"344":41165,"345":41248,"346":41373,"347":41512,"348":41526,"349":41688,"350":41713,"351":41961,"352":42041,"353":42104,"354":42258,"355":42343,"356":42413,"357":42489,"358":42498,"359":42573,"360":42741,"361":42921,"362":43004,"363":43444,"364":43569,"365":43879,"366":43985,"367":44022,"368":44304,"369":44410,"370":44414,"371":44540,"372":44553,"373":44615,"374":44638,"375":44916,"376":44929,"377":45049,"378":45061,"379":45227,"380":45303,"381":45550,"382":45871,"383":45875,"384":45904}},1],[[],"Capbatch","logreg","10"],[[],"CD3E","Capbatch",1],[[],[],[],"cell_type","Rows",-2],[[],[],"Capbatch",["Capbatch","Seqbatch","cell_type","diagnosis","louvain_harmony","louvain_liger","region","sample","sex","stage"]],[[],[],["Capbatch","Seqbatch","cell_type","diagnosis","louvain_harmony","louvain_liger","region","sample","sex","stage"],"pca_harmony","4","NONE"],[[],[],[],"Capbatch",1],[[],[],"Capbatch",[]],[[],[],"Capbatch","Capbatch",null],[[],["CD3E","CD4"],1,"pca_harmony"],[[],"10","default"]]