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# Properties used to configure the web application
# The contents of this file are read into a Properties object that is stored
# as the WEB_PROPERTIES attribute in the Context
# these properties are used by synonymDisplayer.jsp:
# these properties are used by attributeLinkDisplayer.jsp
# the format is 'attributelink' + unique_name + taxonId + attributeName
# + (url|imageName|text)
# the unique_name is used to distinguish between multiple configurations for the same
# attribute/organism/class combination
# the value of the attribute (for the current object) is substituted anywhere the string
# "<<attributeValue>>" occurs in the text or the url
# if post url is defined, then post method will be used
attributelink.flybase1.Gene.7227.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase1.Gene.7227.primaryIdentifier.text=FlyBase
attributelink.flybase1.Gene.7227.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase2.Transcript.7227.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase2.Transcript.7227.primaryIdentifier.text=FlyBase
attributelink.flybase2.Transcript.7227.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase3.Allele.*.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase3.Allele.*.primaryIdentifier.text=FlyBase
attributelink.flybase3.Allele.*.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase4.Stock.*.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase4.Stock.*.primaryIdentifier.text=FlyBase
attributelink.flybase4.Stock.*.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase5.Allele.*.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase5.Allele.*.primaryIdentifier.list.text=FlyBase
attributelink.flybase5.Allele.*.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase5.Allele.*.primaryIdentifier.list.usePost=true
attributelink.flybase5.Allele.*.primaryIdentifier.list.useCheckbox=items
attributelink.flybase6.Stock.*.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase6.Stock.*.primaryIdentifier.list.text=FlyBase
attributelink.flybase6.Stock.*.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase6.Stock.*.primaryIdentifier.list.usePost=true
attributelink.flybase7.Gene.7227.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase7.Gene.7227.primaryIdentifier.list.text=FlyBase
attributelink.flybase7.Gene.7227.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase7.Gene.7227.primaryIdentifier.list.usePost=true
attributelink.flybase7.Gene.7227.primaryIdentifier.list.useCheckbox=items
attributelink.flybase8.Gene.7237.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase8.Gene.7237.primaryIdentifier.text=FlyBase
attributelink.flybase8.Gene.7237.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase9.Gene.7237.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase9.Gene.7237.primaryIdentifier.list.text=FlyBase
attributelink.flybase9.Gene.7237.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase9.Gene.7237.primaryIdentifier.list.usePost=true
attributelink.flybase9.Gene.7237.primaryIdentifier.list.useCheckbox=items
attributelink.flybase10.Gene.7217.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase10.Gene.7217.primaryIdentifier.text=FlyBase
attributelink.flybase10.Gene.7217.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase11.Gene.7217.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase11.Gene.7217.primaryIdentifier.list.text=FlyBase
attributelink.flybase11.Gene.7217.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase11.Gene.7217.primaryIdentifier.list.usePost=true
attributelink.flybase11.Gene.7217.primaryIdentifier.list.useCheckbox=items
attributelink.flybase12.Gene.7220.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase12.Gene.7220.primaryIdentifier.text=FlyBase
attributelink.flybase12.Gene.7220.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase13.Gene.7220.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase13.Gene.7220.primaryIdentifier.list.text=FlyBase
attributelink.flybase13.Gene.7220.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase13.Gene.7220.primaryIdentifier.list.usePost=true
attributelink.flybase13.Gene.7220.primaryIdentifier.list.useCheckbox=items
attributelink.flybase14.Gene.7222.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase14.Gene.7222.primaryIdentifier.text=FlyBase
attributelink.flybase14.Gene.7222.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase15.Gene.7222.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase15.Gene.7222.primaryIdentifier.list.text=FlyBase
attributelink.flybase15.Gene.7222.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase15.Gene.7222.primaryIdentifier.list.usePost=true
attributelink.flybase15.Gene.7222.primaryIdentifier.list.useCheckbox=items
attributelink.flybase16.Gene.7230.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase16.Gene.7230.primaryIdentifier.text=FlyBase
attributelink.flybase16.Gene.7230.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase17.Gene.7230.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase17.Gene.7230.primaryIdentifier.list.text=FlyBase
attributelink.flybase17.Gene.7230.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase17.Gene.7230.primaryIdentifier.list.usePost=true
attributelink.flybase17.Gene.7230.primaryIdentifier.list.useCheckbox=items
attributelink.flybase18.Gene.7234.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase18.Gene.7234.primaryIdentifier.text=FlyBase
attributelink.flybase18.Gene.7234.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase19.Gene.7234.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase19.Gene.7234.primaryIdentifier.list.text=FlyBase
attributelink.flybase19.Gene.7234.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase19.Gene.7234.primaryIdentifier.list.usePost=true
attributelink.flybase19.Gene.7234.primaryIdentifier.list.useCheckbox=items
attributelink.flybase20.Gene.7238.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase20.Gene.7238.primaryIdentifier.text=FlyBase
attributelink.flybase20.Gene.7238.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase21.Gene.7238.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase21.Gene.7238.primaryIdentifier.list.text=FlyBase
attributelink.flybase21.Gene.7238.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase21.Gene.7238.primaryIdentifier.list.usePost=true
attributelink.flybase21.Gene.7238.primaryIdentifier.list.useCheckbox=items
attributelink.flybase22.Gene.7240.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase22.Gene.7240.primaryIdentifier.text=FlyBase
attributelink.flybase22.Gene.7240.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase23.Gene.7240.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase23.Gene.7240.primaryIdentifier.list.text=FlyBase
attributelink.flybase23.Gene.7240.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase23.Gene.7240.primaryIdentifier.list.usePost=true
attributelink.flybase23.Gene.7240.primaryIdentifier.list.useCheckbox=items
attributelink.flybase24.Gene.7244.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase24.Gene.7244.primaryIdentifier.text=FlyBase
attributelink.flybase24.Gene.7244.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase25.Gene.7244.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase25.Gene.7244.primaryIdentifier.list.text=FlyBase
attributelink.flybase25.Gene.7244.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase25.Gene.7244.primaryIdentifier.list.usePost=true
attributelink.flybase25.Gene.7244.primaryIdentifier.list.useCheckbox=items
attributelink.flybase26.Gene.7260.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase26.Gene.7260.primaryIdentifier.text=FlyBase
attributelink.flybase26.Gene.7260.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase27.Gene.7260.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase27.Gene.7260.primaryIdentifier.list.text=FlyBase
attributelink.flybase27.Gene.7260.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase27.Gene.7260.primaryIdentifier.list.usePost=true
attributelink.flybase27.Gene.7260.primaryIdentifier.list.useCheckbox=items
attributelink.flybase28.Gene.7245.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase28.Gene.7245.primaryIdentifier.text=FlyBase
attributelink.flybase28.Gene.7245.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase29.Gene.7245.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase29.Gene.7245.primaryIdentifier.list.text=FlyBase
attributelink.flybase29.Gene.7245.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase29.Gene.7245.primaryIdentifier.list.usePost=true
attributelink.flybase29.Gene.7245.primaryIdentifier.list.useCheckbox=items
attributelink.WormBase.Gene.6239.primaryIdentifier.url=http://www.wormbase.org/db/gene/gene?name=<<attributeValue>>
attributelink.WormBase.Gene.6239.primaryIdentifier.text=Wormbase
attributelink.WormBase.Gene.6239.primaryIdentifier.imageName=WormBase_logo_mini.png
attributelink.WormBaseList.Gene.6239.primaryIdentifier.list.url=http://www.wormbase.org/db/gene/gene?name=<<attributeValue>>
attributelink.WormBaseList.Gene.6239.primaryIdentifier.list.text=Wormbase
attributelink.WormBaseList.Gene.6239.primaryIdentifier.list.imageName=WormBase_logo_mini.png
attributelink.WormBaseList.Gene.6239.primaryIdentifier.list.usePost=true
attributelink.flybase.ChromosomeStructureVariation.*.primaryIdentifier.url=http://flybase.bio.indiana.edu/reports/<<attributeValue>>.html
attributelink.flybase.ChromosomeStructureVariation.*.primaryIdentifier.text=FlyBase
attributelink.flybase.ChromosomeStructureVariation.*.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase.ChromosomeStructureVariation.*.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase.ChromosomeStructureVariation.*.primaryIdentifier.list.text=FlyBase
attributelink.flybase.ChromosomeStructureVariation.*.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase.ChromosomeStructureVariation.*.primaryIdentifier.list.usePost=true
attributelink.flybase.ChromosomeStructureVariation.*.primaryIdentifier.list.useCheckbox=items
attributelink.flybase.TransposableElementInsertionSite.*.primaryIdentifier.url=http://flybase.bio.indiana.edu/reports/<<attributeValue>>.html
attributelink.flybase.TransposableElementInsertionSite.*.primaryIdentifier.text=FlyBase
attributelink.flybase.TransposableElementInsertionSite.*.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.flybase.TransposableElementInsertionSite.*.primaryIdentifier.list.url=http://flybase.org/cgi-bin/export2batch.pl?convert=HitList&items=<<attributeValue>>
attributelink.flybase.TransposableElementInsertionSite.*.primaryIdentifier.list.text=FlyBase
attributelink.flybase.TransposableElementInsertionSite.*.primaryIdentifier.list.imageName=flybase_logo_link.png
attributelink.flybase.TransposableElementInsertionSite.*.primaryIdentifier.list.usePost=true
attributelink.flybase.TransposableElementInsertionSite.*.primaryIdentifier.list.useCheckbox=items
attributelink.flybase.MiRNA.7227.primaryIdentifier.url=http://www.flybase.org/.bin/fbidq.html?<<attributeValue>>
attributelink.flybase.MiRNA.7227.primaryIdentifier.text=FlyBase
attributelink.flybase.MiRNA.7227.primaryIdentifier.imageName=flybase_logo_link.png
attributelink.genomeRNAi.RNAiScreen.*.identifier.url=http://www.genomernai.org/ExternalLink/stableid/<<attributeValue>>
attributelink.genomeRNAi.RNAiScreen.*.identifier.text=GenomeRNAi
attributelink.genomeRNAi2.Gene.7227.primaryIdentifier.url=http://genomernai.org/ExternalLink/flybase/<<attributeValue>>
attributelink.genomeRNAi2.Gene.7227.primaryIdentifier.text=GenomeRNAi
# array express atlas
attributelink.ArrayExpressAtlas.Gene.9606.primaryIdentifier.url=http://www.ebi.ac.uk/gxa/gene/<<attributeValue>>
attributelink.ArrayExpressAtlas.Gene.9606.primaryIdentifier.text=ArrayExpress Atlas
attributelink.ArrayExpressAtlas.Gene.9606.primaryIdentifier.imageName=arrayExpressAtlas_logo.png
attributelink.ArrayExpressAtlas.Gene.7227.primaryIdentifier.url=http://www.ebi.ac.uk/gxa/gene/<<attributeValue>>
attributelink.ArrayExpressAtlas.Gene.7227.primaryIdentifier.text=ArrayExpress Atlas
attributelink.ArrayExpressAtlas.Gene.7227.primaryIdentifier.imageName=arrayExpressAtlas_logo.png
attributelink.ArrayExpressAtlas.Gene.10090.primaryIdentifier.url=http://www.ebi.ac.uk/gxa/gene/<<attributeValue>>
attributelink.ArrayExpressAtlas.Gene.10090.primaryIdentifier.text=ArrayExpress Atlas
attributelink.ArrayExpressAtlas.Gene.10090.primaryIdentifier.imageName=arrayExpressAtlas_logo.png
attributelink.ArrayExpressAtlas.Gene.10116.primaryIdentifier.url=http://www.ebi.ac.uk/gxa/gene/<<attributeValue>>
attributelink.ArrayExpressAtlas.Gene.10116.primaryIdentifier.text=ArrayExpress Atlas
attributelink.ArrayExpressAtlas.Gene.10116.primaryIdentifier.imageName=arrayExpressAtlas_logo.png
attributelink.ArrayExpressAtlas.Gene.4932.secondaryIdentifier.url=http://www.ebi.ac.uk/gxa/gene/<<attributeValue>>
attributelink.ArrayExpressAtlas.Gene.4932.secondaryIdentifier.text=ArrayExpress Atlas
attributelink.ArrayExpressAtlas.Gene.4932.secondaryIdentifier.imageName=arrayExpressAtlas_logo.png
attributelink.ArrayExpressAtlas.Gene.6239.secondaryIdentifier.url=http://www.ebi.ac.uk/gxa/gene/<<attributeValue>>
attributelink.ArrayExpressAtlas.Gene.6239.secondaryIdentifier.text=ArrayExpress Atlas
attributelink.ArrayExpressAtlas.Gene.6239.secondaryIdentifier.imageName=arrayExpressAtlas_logo.png
# FlyExpress link configuration
attributelink.flyexpress.Gene.7227.primaryIdentifier.url=http://www.flyexpress.net/search.php?type=image&search=<<attributeValue>>
attributelink.flyexpress.Gene.7227.primaryIdentifier.text=FlyExpress
attributelink.flyexpress.Gene.7227.primaryIdentifier.imageName=flyexpress_logo_link.png
attributelink.flyexpress.Gene.7227.primaryIdentifier.list.url=http://www.flyexpress.net/batch.php?items=<<attributeValue>>
attributelink.flyexpress.Gene.7227.primaryIdentifier.list.text=FlyExpress
attributelink.flyexpress.Gene.7227.primaryIdentifier.list.imageName=flyexpress_logo_link.png
attributelink.flyexpress.Gene.7227.primaryIdentifier.list.usePost=true
# FlyAtlas link configuration
attributelink.flyatlas.Gene.7227.primaryIdentifier.url=http://flyatlas.org/atlas.cgi?name=<<attributeValue>>
attributelink.flyatlas.Gene.7227.primaryIdentifier.text=FlyAtlas
attributelink.flyatlas.Gene.7227.primaryIdentifier.imageName=flyatlas_logo_link.png
# BDGP in situ link configuration
attributelink.bdgp_in_situ.Gene.7227.secondaryIdentifier.url=http://insitu.fruitfly.org/cgi-bin/ex/report.pl?ftype=1&ftext=<<attributeValue>>
attributelink.bdgp_in_situ.Gene.7227.secondaryIdentifier.text=BDGP in situ
attributelink.bdgp_in_situ.Gene.7227.secondaryIdentifier.imageName=BDGP_logo_small.png
#Homologene link configuration - only possible for Ag,Mm,Dm,Ce,Sp and Sc due to identifiers in flymine
attributelink.homologene.Gene.7165.primaryIdentifier.url=https://www.ncbi.nlm.nih.gov/sites/entrez?Db=homologene&cmd=detailssearch&term=txid7165[orgn]+AgaP_<<attributeValue>>[Gene]
attributelink.homologene.Gene.7165.primaryIdentifier.text=Homologene
attributelink.homologene.Gene.7165.primaryIdentifier.imageName=homologene_logo_link.png
attributelink.homologene.Gene.10090.symbol.url=https://www.ncbi.nlm.nih.gov/sites/entrez?Db=homologene&cmd=detailssearch&term=txid10090[orgn]+<<attributeValue>>[Gene]
attributelink.homologene.Gene.10090.symbol.text=Homologene
attributelink.homologene.Gene.10090.symbol.imageName=homologene_logo_link.png
attributelink.homologene.Gene.6239.symbol.url=https://www.ncbi.nlm.nih.gov/sites/entrez?Db=homologene&cmd=detailssearch&term=txid6239[orgn]+<<attributeValue>>[Gene]
attributelink.homologene.Gene.6239.symbol.text=Homologene
attributelink.homologene.Gene.6239.symbol.imageName=homologene_logo_link.png
attributelink.homologene.Gene.7227.symbol.url=https://www.ncbi.nlm.nih.gov/sites/entrez?Db=homologene&cmd=detailssearch&term=txid7227[orgn]+<<attributeValue>>[Gene]
attributelink.homologene.Gene.7227.symbol.text=Homologene
attributelink.homologene.Gene.7227.symbol.imageName=homologene_logo_link.png
attributelink.homologene.Gene.4932.symbol.url=https://www.ncbi.nlm.nih.gov/sites/entrez?Db=homologene&cmd=detailssearch&term=txid4932[orgn]+<<attributeValue>>[Gene]
attributelink.homologene.Gene.4932.symbol.text=Homologene
attributelink.homologene.Gene.4932.symbol.imageName=homologene_logo_link.png
attributelink.homologene.Gene.9606.symbol.url=https://www.ncbi.nlm.nih.gov/sites/entrez?Db=homologene&cmd=detailssearch&term=txid9606[orgn]+<<attributeValue>>[Gene]
attributelink.homologene.Gene.9606.symbol.text=Homologene
attributelink.homologene.Gene.9606.symbol.imageName=homologene_logo_link.png
attributelink.homologene.Gene.10116.symbol.url=https://www.ncbi.nlm.nih.gov/sites/entrez?Db=homologene&cmd=detailssearch&term=txid10116[orgn]+<<attributeValue>>[Gene]
attributelink.homologene.Gene.10116.symbol.text=Homologene
attributelink.homologene.Gene.10116.symbol.imageName=homologene_logo_link.png
attributelink.homologene.Gene.10090.symbol.url=https://www.ncbi.nlm.nih.gov/sites/entrez?Db=homologene&cmd=detailssearch&term=txid10090[orgn]+<<attributeValue>>[Gene]
attributelink.homologene.Gene.10090.symbol.text=Homologene
attributelink.homologene.Gene.10090.symbol.imageName=homologene_logo_link.png
# Entrez Gene link configuration Dm,Ag,Ce,Sc
#attributelink.entrez_gene.Gene.*.primaryIdentifier.url=https://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_report&list_uids=<<attributeValue>>
#attributelink.entrez_gene.Gene.*.primaryIdentifier.text=Entrez Gene
#attributelink.entrez_gene.Gene.*.primaryIdentifier.imageName=entrezgene_logo_link.png
attributelink.mgi.Gene.10090.secondaryIdentifier.url=http://www.informatics.jax.org/javawi2/servlet/WIFetch?page=markerDetail&id=<<attributeValue>>
attributelink.mgi.Gene.10090.secondaryIdentifier.text=MGI
attributelink.mgi.Gene.10090.secondaryIdentifier.imageName=mgi_logo_link.jpg
attributelink.vectorBase.Gene.7165.primaryIdentifier.url=http://agambiae.vectorbase.org/Genome/GeneView/?gene=<<attributeValue>>
attributelink.vectorBase.Gene.7165.primaryIdentifier.text=VectorBase
attributelink.vectorBase.Gene.7165.primaryIdentifier.imageName=VectorBase_logo_link.png
attributelink.ensembl.Gene.7227.primaryIdentifier.url=http://www.ensembl.org/Drosophila_melanogaster/geneview?db=core&gene=<<attributeValue>>
attributelink.ensembl.Gene.7227.primaryIdentifier.text=ensembl
attributelink.ensembl.Gene.7227.primaryIdentifier.imageName=ensembl_logo_link.gif
attributelink.ensembl.Gene.7165.primaryIdentifier.url=http://www.ensembl.org/Anopheles_gambiae/geneview?db=core&gene=<<attributeValue>>
attributelink.ensembl.Gene.7165.primaryIdentifier.text=ensembl
attributelink.ensembl.Gene.7165.primaryIdentifier.imageName=ensembl_logo_link.gif
attributelink.ensembl.Gene.9606.primaryIdentifier.url=http://www.ensembl.org/Homo_sapiens/geneview?gene=<<attributeValue>>
attributelink.ensembl.Gene.9606.primaryIdentifier.text=ensembl
attributelink.ensembl.Gene.9606.primaryIdentifier.imageName=ensembl_logo_link.gif
attributelink.ensembl.Gene.10116.primaryIdentifier.url=http://www.ensembl.org/Rattus_norvegicus/geneview?gene=<<attributeValue>>
attributelink.ensembl.Gene.10116.primaryIdentifier.text=ensembl
attributelink.ensembl.Gene.10116.primaryIdentifier.imageName=ensembl_logo_link.gif
attributelink.ensembl.Gene.10090.primaryIdentifier.url=http://www.ensembl.org/Mus_musculus/geneview?gene=<<attributeValue>>
attributelink.ensembl.Gene.10090.primaryIdentifier.text=ensembl
attributelink.ensembl.Gene.10090.primaryIdentifier.imageName=ensembl_logo_link.gif
# broken links because KEGG uses NCBI gene number, which ZFIN doesn't have. change to fishmine link?
#attributelink.ZFIN.Gene.7955.primaryIdentifier.url=http://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=<<attributeValue>>
#attributelink.ZFIN.Gene.7955.organsimDbId.text=ZFIN: <<attributeValue>>
#attributelink.ZFIN.Gene.7955.primaryIdentifier.imageName=ensembl_logo_link.gif
attributelink.SGD.Gene.4932.primaryIdentifier.url=http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=<<attributeValue>>
attributelink.SGD.Gene.4932.primaryIdentifier.text=SGD
attributelink.SGD.Gene.4932.primaryIdentifier.imageName=SGD_logo_link.gif
attributelink.BioGRID.Gene.9606.primaryIdentifier.url=http://thebiogrid.org/search.php?search=<<attributeValue>>&organism=9606
attributelink.BioGRID.Gene.9606.primaryIdentifier.text=BioGRID
attributelink.BioGRID.Gene.10116.primaryIdentifier.url=http://thebiogrid.org/search.php?search=<<attributeValue>>&organism=10116
attributelink.BioGRID.Gene.10116.primaryIdentifier.text=BioGRID
attributelink.BioGRID.Gene.10090.primaryIdentifier.url=http://thebiogrid.org/search.php?search=<<attributeValue>>&organism=10090
attributelink.BioGRID.Gene.10090.primaryIdentifier.text=BioGRID
attributelink.BioGRID.Gene.7165.primaryIdentifier.url=http://thebiogrid.org/search.php?search=<<attributeValue>>&organism=7165
attributelink.BioGRID.Gene.7165.primaryIdentifier.text=BioGRID
attributelink.uniProt.Protein.*.uniprotAccession.url=http://www.uniprot.org/uniprot/<<attributeValue>>
attributelink.uniProt.Protein.*.uniprotAccession.text=uniprot
attributelink.uniProt.Protein.*.uniprotAccession.imageName=uniprot_logo_link.jpeg
attributelink.interPro.ProteinDomain.*.primaryIdentifier.url=http://www.ebi.ac.uk/interpro/entry/<<attributeValue>>
attributelink.interPro.ProteinDomain.*.primaryIdentifier.text=InterPro
attributelink.omim.Disease.*.identifier.url=https://www.ncbi.nlm.nih.gov/omim/<<attributeValue>>
attributelink.omim.Disease.*.identifier.text=OMIM
attributelink.omim.Disease.*.identifier.imageName=OMIM_logo_mini.png
# need to update this link when other organisms are added for KEGG
# displayed manually by pathwayDisplayer
attributelink.KEGG.Pathway.*.identifier.url=http://www.genome.jp/dbget-bin/www_bget?map<<attributeValue>>
attributelink.KEGG.Pathway.*.identifier.text=KEGG: <<attributeValue>>
attributelink.KEGG.Pathway.*.identifier.imageName=KEGG_logo_mini.gif
attributelink.KEGG.Pathway.*.identifier.dataset=KEGG pathways data set
# the dmel identifiers change every release, so these links are rarely correct
attributelink.reactome.Pathway.*.identifier.url=http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_<<attributeValue>>
attributelink.reactome.Pathway.*.identifier.text=Reactome: <<attributeValue>>
attributelink.reactome.Pathway.*.identifier.imageName=Reactome_logo.png
attributelink.reactome.Pathway.*.identifier.dataset=Reactome pathways data set
attributelink.PubMed.Publication.*.pubMedId.url=https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=
attributelink.PubMed.Publication.*.pubMedId.text=PubMed
attributelink.PubMed.Publication.*.pubMedId.imageName=PubMed_logo_small.png
attributelink.NCBI.Organism.*.taxonId.url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=<<attributeValue>>
attributelink.NCBI.Organism.*.taxonId.text=NCBI Taxonomy Browser
attributelink.redfly.CRM.*.secondaryIdentifier.url=http://redfly.ccr.buffalo.edu/search.php?name=<<attributeValue>>&exact_term=false
attributelink.redfly.CRM.*.secondaryIdentifier.text=REDfly Regulatory Element Database
attributelink.redfly.TFBindingSite.*.secondaryIdentifier.url=http://redfly.ccr.buffalo.edu/search.php?name=<<attributeValue>>&exact_term=false
attributelink.redfly.TFBindingSite.*.secondaryIdentifier.text=REDfly Regulatory Element Database
attributelink.string.Gene.*.symbol.list.url=http://string.embl.de/interactionsList/<<attributeValue>>
attributelink.string.Gene.*.symbol.list.text=String - Known and Predicted Protein-Protein Interactions
attributelink.string.Gene.*.symbol.list.delimiter=%0D
attributelink.string.Gene.*.symbol.list.imageName=string_logo.gif
attributelink.stringProt.Protein.*.primaryIdentifier.list.url=http://string.embl.de/interactionsList/<<attributeValue>>
attributelink.stringProt.Protein.*.primaryIdentifier.list.text=String - Known and Predicted Protein-Protein Interactions
attributelink.stringProt.Protein.*.primaryIdentifier.list.delimiter=%0D
attributelink.stringProt.Protein.*.primaryIdentifier.list.imageName=string_logo.gif
attributelink.stitch.Gene.*.symbol.list.url=http://stitch.embl.de/interactionsList/<<attributeValue>>
attributelink.stitch.Gene.*.symbol.list.text=Stitch 2 - Known and Predicted Chemical-Protein Interactions
attributelink.stitch.Gene.*.symbol.list.delimiter=%0D
attributelink.stitch.Gene.*.symbol.list.imageName=stitch_logo.gif
attributelink.stitchProt.Protein.*.primaryIdentifier.list.url=http://stitch.embl.de/interactionsList/<<attributeValue>>
attributelink.stitchProt.Protein.*.primaryIdentifier.list.text=Stitch 2 - Known and Predicted Chemical-Protein Interactions
attributelink.stitchProt.Protein.*.primaryIdentifier.list.delimiter=%0D
attributelink.stitchProt.Protein.*.primaryIdentifier.list.imageName=stitch_logo.gif
# need to test which identifiers reactome needs
#attributelink.reactomeList.Gene.*.secondaryIdentifier.list.url=http://www.reactome.org/cgi-bin/skypainter2?QUERY=<<attributeValue>>&SUBMIT=1&DB=gk_current
#attributelink.reactomeList.Gene.*.secondaryIdentifier.list.text=Reactome
#attributelink.reactomeList.Gene.*.secondaryIdentifier.list.usePost=true
#attributelink.reactomeList.Gene.*.secondaryIdentifier.list.enctype=multipart/form-data
#attributelink.reactomeList.Gene.*.secondaryIdentifier.list.delimiter=NEWLINE
attributelink.reactomeListProt.Protein.7227.primaryIdentifier.list.url=http://www.reactome.org/cgi-bin/skypainter2?QUERY=<<attributeValue>>&SUBMIT=1&DB=gk_current
attributelink.reactomeListProt.Protein.7227.primaryIdentifier.list.text=Reactome
attributelink.reactomeListProt.Protein.7227.primaryIdentifier.list.usePost=true
attributelink.reactomeListProt.Protein.7227.primaryIdentifier.list.enctype=multipart/form-data
attributelink.reactomeListProt.Protein.7227.primaryIdentifier.list.delimiter=NEWLINE
# complexes
attributelink.intactPSI.Complex.*.identifier.url=http://www.ebi.ac.uk/intact/complex/details/<<attributeValue>>
attributelink.intactPSI.Complex.*.identifier.text=IntAct
# CrossReferencelink
xreflink.GENE3D.url=http://www.cathdb.info/cathnode/<<attributeValue>>
xreflink.RefSeq.url=https://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=<<attributeValue>>
xreflink.HAMAP.url=http://www.expasy.org/unirule/<<attributeValue>>
xreflink.PANTHER.url=http://www.pantherdb.org/panther/family.do?clsAccession=<<attributeValue>>
xreflink.PFAM.url=http://pfam.sanger.ac.uk/family?<<attributeValue>>
xreflink.PIRSF.url=http://pir.georgetown.edu/cgi-bin/ipcSF?id=<<attributeValue>>
xreflink.PRINTS.url=http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&prints_accn=<<attributeValue>>
xreflink.PRODOM.url=http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=<<attributeValue>>
xreflink.PROFILE.url=http://expasy.org/prosite/<<attributeValue>>
xreflink.PROSITE.url=http://expasy.org/prosite/<<attributeValue>>
xreflink.SMART.url=http://smart.embl-heidelberg.de/smart/do_annotation.pl?ACC=<<attributeValue>>
xreflink.SSF.url=http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=<<attributeValue>>
xreflink.TIGRFAMs.url=http://cmr.jcvi.org/cgi-bin/CMR/HmmReport.cgi?hmm_acc=<<attributeValue>>
xreflink.NCBI\ Entrez\ Gene\ identifiers.url=https://www.ncbi.nlm.nih.gov/gene/?term=<<attributeValue>>[uid]
xreflink.NCBI.url=https://www.ncbi.nlm.nih.gov/gquery/?term=<<attributeValue>>
xreflink.Ensembl.url=http://www.ensembl.org/Multi/Search/Results?species=all;idx=;q=<<attributeValue>>
xreflink.Vega.url=http://vega.sanger.ac.uk/Multi/Search/Results?species=all;idx=;q=<<attributeValue>>
xreflink.HGNC.url=http://www.genenames.org/data/hgnc_data.php?hgnc_id=<<attributeValue>>
xreflink.BioGRID.url=http://thebiogrid.org/<<attributeValue>>
# portal
portal.welcome = Welcome to FlyMine!
portal.welcome.flybase = Welcome to FlyMine. This page provides a summary of the information \
available for the selected FlyBase gene.<ul><li>Click on <b>'Home'</b> above to \
go to the main FlyMine start page.</li><li>For help, use the <b>[help...]</b> and <b>?</b> \
links or contact us using the <b>feedback form</b> at the bottom of the page.</li></ul>
# not working right now see #1911
# portal.verbose.fields.Gene=chromosome,proteins,GOTerms,orthologues
# Header - these will populate the top right navigation
header.links=help,about,cite,software
header.links.about=https://intermineorg.wordpress.com/flymine/about/
header.links.cite=https://intermineorg.wordpress.com/flymine/cite-flymine/
header.links.help=https://intermineorg.wordpress.com/flymine/help/
header.links.software=https://intermineorg.wordpress.com/flymine/software/
# examples for the quicksearch
quickSearch.identifiers = e.g zen, Q9V4E1
meta.keywords = microarray, bioinformatics, drosophila, genomics
meta.description = Integrated queryable database for Drosophila genomics
# theme used (themes in intermine/webapp/main/resources/webapp/themes/)
theme = purple
# galaxy
## set to "false" to disable galaxy
galaxy.display = true
galaxy.disabledMessage = Galaxy export is disabled.
galaxy.baseurl.default = http://main.g2.bx.psu.edu
galaxy.url.value = /tool_runner?tool_id=flymine
galaxy.welcomeMessage = <b>Welcome to FlyMine, GALAXY users!</b><br/><br/>You can run queries by \
clicking on the 'Templates' tab at the top of this page.&nbsp;&nbsp;You can send the query results \
to Galaxy from the 'EXPORT' menu in the results page.
################ begin.jsp (homepage) config ################
links.blog = http://blog.flymine.org
# search box
begin.searchBox.title = Search
begin.searchBox.description = Search FlyMine. Enter <strong>names</strong>, <strong>identifiers</strong> \
or <strong>keywords</strong> for genes, proteins, pathways, ontology terms, authors, etc. (e.g. \
<em>eve</em>, HIPPO_DROME, glycolysis, <em>hb</em> allele).
begin.searchBox.example = e.g. zen, adh, CG2328, FBgn0000099
# temp fix for 1878
#bag.example.identifiers.protein=Q8T3M3,FBpp0081318,FTZ_DROME
# bag upload examples
bag.example.identifiers=CG9151, FBgn0000099, CG3629, TfIIB, Mad, CG1775, CG2262, TWIST_DROME, \
tinman, runt, E2f, CG8817, FBgn0010433, CG9786, CG1034, ftz, FBgn0024250, FBgn0001251, tll, \
CG1374, CG33473, ato, so, CG16738, tramtrack, CG2328, gt
# list upload box
begin.listBox.title = Analyse
begin.listBox.description = Enter a <strong>list</strong> of identifiers.
# third box
begin.thirdBox.title = First Time Here?
begin.thirdBox.visitedTitle = Welcome Back!
begin.thirdBox.description = FlyMine integrates many types of data for <em>Drosophila</em>, \
<em>Anopheles</em> and other organisms. You can run flexible queries, export results and analyse lists of \
data.
begin.thirdBox.link = http://www.screencast.com/users/intermine/folders/InterMine/media/e8e3b7e6-b303-408d-bef3-f2cbb4ba722b
begin.thirdBox.linkTitle = Take a video tour
# popular templates in tabs, template category (key identifier)
begin.tabs.1.id = Genes
begin.tabs.1.description = The gene models and other genome annotation in FlyMine are provided by a variety \
of source databases including: FlyBase, UniProt, Ensembl and over 30 other data sources.
begin.tabs.2.id = Interactions
begin.tabs.2.description = FlyMine loads physical interactions from IntAct and BioGRID and genetic \
interactions from FlyBase.
begin.tabs.3.id = Homology
begin.tabs.3.description = FlyMine loads homologue predictions from Ensembl, KEGG and TreeFam.
begin.tabs.4.id = Function
begin.tabs.4.description = FlyMine loads Gene Ontology annotation from MGI, FlyBase, WormBase, UniProt, \
SGD, and InterPro; domain data from InterPro; disease data from OMIM; and pathways data from Reactome and KEGG.
begin.tabs.5.id = Regulation
begin.tabs.5.description = FlyMine loads transcriptional regulation data from FlyBase and REDFly.
begin.tabs.6.id = Expression
begin.tabs.6.description = FlyMine loads gene expression data for Drosophila melanogaster \
from FlyAtlas, BDGP, ArrayExpress and Fly-FISH.
begin.listsBox.description = You can run queries on whole lists of data. Create lists from the results of a query \
or by uploading identifiers. Click on a list to view graphs and summaries in a list analysis page, if you log in \
you can save lists permanently.
# used to redirect links in webapp
webapp.linkRedirect=org.intermine.bio.web.BioLinkRedirectManager
# links to intermine report pages will be replaced with these URLs
#externallink.elMouse.Gene.10090.primaryIdentifier.url=http://www.mousemine.org/mousemine/portal.do?externalids=<<attributeValue>>&class=Gene&origin=FlyMine
#externallink.elRat.Gene.10116.primaryIdentifier.url=http://www.intermine.org/rgd/portal.do?externalids=<<attributeValue>>&class=Gene&origin=FlyMine
#externallink.elYeast.Gene.4932.primaryIdentifier.url=http://www.intermine.org/sgd/portal.do?externalids=<<attributeValue>>&class=Gene&origin=FlyMine
#externallink.elZebrafish.Gene.7955.primaryIdentifier.url=http://www.zfin.org/<<attributeValue>>
#externallink.elWorm.Gene.6239.primaryIdentifier.url=http://www.wormbase.org/species/c_elegans/gene/query=<<attributeValue>>
# Genomic Region Search
genomicRegionSearch.initBatchSize = 100000
genomicRegionSearch.display = true
genomicRegionSearch.service =
genomicRegionSearch.optionsJavascript =
genomicRegionSearch.resultsJavascript =
genomicRegionSearch.optionsCss =
genomicRegionSearch.resultsCss =
# Make sure pre-defined organisms have chromosome location information in the database
genomicRegionSearch.defaultOrganisms = D. melanogaster
# Exclude feature types for all organisms, comma separated
genomicRegionSearch.featureTypesExcluded.global = GeneFlankingRegion,YouNameItClass
# Exclude feature types for each specific organism
genomicRegionSearch.featureTypesExcluded.byOrganism = D. melanogaster:GeneFlankingRegion,YouNameItClass;
genomicRegionSearch.defaultSpans = 2L:14615455..14619002\\n2R:5866646..5868384\\n3R:2578486..2580016
genomicRegionSearch.caption = Search for features that overlap a list of genome coordinates you enter or upload, e.g. <b>2L:11334..12296</b>
genomicRegionSearch.howTo = <ul>\
<li>Genome regions in the following formats are accepted:\
<ul>\
<li><b>chromosome:start..end</b>, e.g. <i>2L:11334..12296</i></li>\
<li><b>chromosome:start-end</b>, e.g. <i>2R:5866746-5868284</i> or <i>chrII:14646344-14667746</i></li>\
<li><b>tab delimited</b></li>\
</ul>\
<li>Both <b>base coordinate</b> (e.g. <a href="https://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#get_subsequence" target="_blank">BLAST</a>, \
<a href="http://www.sequenceontology.org/gff3.shtml" target="_blank">GFF/GFF3</a>) and <b>interbase coordinate</b> (e.g. \
<a href="http://genome.ucsc.edu/FAQ/FAQformat#format1" target="_blank">UCSC BED</a>, \
<a href="http://gmod.org/wiki/Introduction_to_Chado#Interbase_Coordinates" target="_blank">Chado</a>) \
systems are supported, e.g. for a DNA piece <b>GCCATGTA</b>, \
the position of the <b>ATG</b> in interbase is [3, 6], and in base coordinates is [4, 6]. \
Users need to explicitly select one. By default, the base coordinate is selected.\
</li>\
<li>Each genome region needs to take a <b>new line</b>.</li>\
</ul>
genomicRegionSearch.query.Gene.views = {0}.primaryIdentifier,{0}.symbol,{0}.chromosomeLocation.locatedOn.primaryIdentifier,{0}.chromosomeLocation.start,{0}.chromosomeLocation.end,{0}.organism.shortName
genomicRegionSearch.query.Gene.sortOrder = {0}.chromosomeLocation.start asc
# if liftOver is true, don't forget to add liftOver relevant properties to struts-config-form-model.xml
genomicRegionSearch.liftOver = false
genomicRegionSearch.liftOver.url =
genomicRegionSearch.exportChromosomeSegment = true
# if enableStrandSpecificSearch is true then the mine's resources/struts-config-form-model.xml must have the entry
# <form-bean name="genomicRegionSearchForm" type="org.intermine.bio.web.struts.GenomicRegionSearchForm">
# ...
# <form-property name="strandSpecific" type="java.lang.Boolean"/>
# </form-bean>
genomicRegionSearch.enableStrandSpecificSearch = true
inline.collections.in.tables = true
web.collections.expandonload = false
branding.images.logo = http://www.flymine.org/flymine/model/images/logo.png
branding.colors.header.main = #5c0075
branding.colors.header.text = #fff
project.citation=<a href="https://www.ncbi.nlm.nih.gov/pubmed/17615057" target="_blank">Lyne R, et al. FlyMine: an integrated database for Drosophila and Anopheles genomics. Genome Biol. 2007;8(7):R129.</a>
services.defaults.query = <query model="genomic" view="Gene.secondaryIdentifier Gene.symbol Gene.primaryIdentifier Gene.organism.name" sortOrder="Gene.secondaryIdentifier ASC" ><constraint path="Gene.organism.name" op="=" value="Drosophila melanogaster" code="A" /></query>