A powerful open source data warehouse system. InterMine allows users to integrate diverse data sources with a minimum of effort, providing powerful web-services and an elegant web-application with minimal configuration. InterMine powers some of the largest data-warehouses in the life sciences, including:
For the full list of InterMines, please see the registry
For details, please visit: InterMine Documentation
If you run an InterMine, or use one in your research, in order to improve the chance of continued funding for the project it would be appreciated if groups that use InterMine or parts of InterMine would let us know.
Getting Started With InterMine
For a guide on getting started with InterMine, please visit: tutorial
# For the testmodel ./testmine/setup.sh
For a genomic application, with test data from Malaria, see BioTestMine
You can build InterMine using Docker. See https://github.com/intermine/docker-intermine-gradle
Copyright and Licence
Copyright (C) 2002-2019 FlyMine
See LICENSE file for licensing information.
This product includes software developed by the Apache Software Foundation
InterMine: extensive web services for modern biology.
Kalderimis A, Lyne R, Butano D, Contrino S, Lyne M, Heimbach J, Hu F, Smith R, Stěpán R, Sullivan J, Micklem G.
Nucleic Acids Res. 2014 Jul; 42 (Web Server issue): W468-72
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.
Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G.
Bioinformatics (2012) 28 (23): 3163-3165.
See zotero for the full list of InterMine publications.