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Deep learning to distinguish benign from malignant renal lesions based on routine MR imaging

Running this project

This project can be initiated using simple scripts.

  1. Inspect and edit the config.py file to match your local installation preferences, i.e. where the project should expect to find your data files as well as where the project should output your results
  2. The project expects your data to be in a folder referenced by the environment variable: $DATA_DIR
  3. Initialize the project (creating the necessary directory and databases) using setup.sh
  4. Run the project using run.sh
  5. (optional) create a pushover-secret.sh file to receive pushover notifications when your run is completed:

Results

To inspect the jupyter notebook used to generate the results associated with this publication, please see results.ipynb

Comments

  • This project uses Pipenv for dependency management. To get the necessary packages, run pipenv install --skip-lock