robis

R client for the OBIS API

Installation

install.packages("devtools")
devtools::install_github("iobis/robis")

Get occurrences by scientific name:

data <- occurrence("Abra alba")

Get occurrences by AphiaID:

data <- occurrence(aphiaid = 141433)

Restrict fields in result set:

data <- occurrence("Abra alba", fields = c("decimalLongitude", "decimalLatitude"))

Filter occurrences by QC flags:

data <- occurrence("Abra nitida", qc = c(22, 23))

Get occurrences by geometry:

data <- occurrence("Abra alba", geometry = "POLYGON ((2.59689 51.16772, 2.62436 51.14059, 2.76066 51.19225, 2.73216 51.20946, 2.59689 51.16772))")

Plot occurrences on a Leaflet map:

leafletmap(data)

Get a checklist for a specific group and year:

data <- checklist("Semelidae", year = 2005)

Get a checklist for a region:

data <- checklist(geometry = "POLYGON ((2.59689 51.16772, 2.62436 51.14059, 2.76066 51.19225, 2.73216 51.20946, 2.59689 51.16772))")

Failed to load latest commit information.
R	support for areaid	Mar 15, 2017
man	support for areaid	Mar 15, 2017
tests	support multiple years, fixed qc test	Feb 13, 2017
.Rbuildignore	travis	Dec 13, 2015
.gitignore	first commit	Dec 6, 2015
.travis.yml	coveralls	Dec 13, 2015
DESCRIPTION	support for areaid	Mar 15, 2017
LICENSE.md	Create LICENSE.md	Oct 18, 2016
NAMESPACE	support for areaid	Mar 15, 2017
README.md	Update README.md	Jan 4, 2017
robis.Rproj	changed name to robis	Dec 15, 2015