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  1. singlet Public

    Single cell RNA Seq data analysis with quantitative phenotypes

    Python 11 7

  2. Docker/Singularity containers for high-throughput sequencing pipelines in the cloud and on the ground

    Shell 1 2

  3. lshknn Public

    k nearest neighbor (KNN) graphs via Pearson correlation distance and local sensitive hashing (LSH).

    Python 15 2

  4. htseq/htseq Public

    Forked from simon-anders/htseq

    HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

    Python 50 20

  5. seqanpy Public

    Fast pairwise sequence alignment using SeqAn, in Python.

    C++ 10 7

  6. hivwholeweb Public

    Web application for deep sequencing on longitudinal HIV-1 samples from patients.

    JavaScript 3 4

136 contributions in the last year

May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Mon Wed Fri

Contribution activity

May 2022

2 contributions in private repositories May 4 – May 5

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