{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":351155358,"defaultBranch":"master","name":"viridian","ownerLogin":"iqbal-lab-org","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-03-24T16:47:11.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/29255841?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1718101093.0","currentOid":""},"activityList":{"items":[{"before":"919be0ad16dce11a86437c5660776513ec66a4cf","after":"6846679b6727318ecdaa157c8df60523217d1f52","ref":"refs/heads/master","pushedAt":"2024-06-11T12:33:20.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Merge pull request #113 from martinghunt/artic_bed_support\n\nSupport amplicon schemes in artic bed format","shortMessageHtmlLink":"Merge pull request #113 from martinghunt/artic_bed_support"}},{"before":null,"after":"141b1bc43cae41645305a1d351eb8e8e7d707bc4","ref":"refs/heads/artic_bed_support","pushedAt":"2024-06-11T10:18:13.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Allow amplicon schemes in artic bed format","shortMessageHtmlLink":"Allow amplicon schemes in artic bed format"}},{"before":"ace49accb75312a621b49c8206a42df3d607c1f8","after":"919be0ad16dce11a86437c5660776513ec66a4cf","ref":"refs/heads/master","pushedAt":"2024-05-07T14:05:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Force delete because file(s) may not exist","shortMessageHtmlLink":"Force delete because file(s) may not exist"}},{"before":"cb6f1b3155691f2dd15901f90737afdc5acff8f8","after":"ace49accb75312a621b49c8206a42df3d607c1f8","ref":"refs/heads/master","pushedAt":"2024-04-30T14:16:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Version bump 1.2.2","shortMessageHtmlLink":"Version bump 1.2.2"}},{"before":"520a44dae961bb92686fbd2b335ecf6c23975c14","after":"cb6f1b3155691f2dd15901f90737afdc5acff8f8","ref":"refs/heads/master","pushedAt":"2024-04-30T14:12:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Update README.md\n\nFixes because renamed from viridian_workflow to viridian","shortMessageHtmlLink":"Update README.md"}},{"before":"e92e5a1abe3bc609ab2d56f31a9ac4fb0198bf36","after":"520a44dae961bb92686fbd2b335ecf6c23975c14","ref":"refs/heads/master","pushedAt":"2024-04-30T12:36:25.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"github actions ignore markdown files","shortMessageHtmlLink":"github actions ignore markdown files"}},{"before":"24ffe1ca1f325586da2587dab8a8af2a509f8f50","after":"e92e5a1abe3bc609ab2d56f31a9ac4fb0198bf36","ref":"refs/heads/master","pushedAt":"2024-04-30T10:08:34.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Merge pull request #112 from martinghunt/bug_fix_one_scheme\n\nBug fix no score ratio when only one scheme","shortMessageHtmlLink":"Merge pull request #112 from martinghunt/bug_fix_one_scheme"}},{"before":"e0250ec711a4da206303d89401430bd3ec275c09","after":"24ffe1ca1f325586da2587dab8a8af2a509f8f50","ref":"refs/heads/master","pushedAt":"2024-04-26T13:34:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"rename viridian workflow to viridian","shortMessageHtmlLink":"rename viridian workflow to viridian"}},{"before":"a1625fcc33bff0239942388d6368846d7f19c8cf","after":"e0250ec711a4da206303d89401430bd3ec275c09","ref":"refs/heads/master","pushedAt":"2024-03-20T11:31:45.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Version bump 1.2.0","shortMessageHtmlLink":"Version bump 1.2.0"}},{"before":"c9889959ed7e57b62a2f80d20223ec5be4b14066","after":"a1625fcc33bff0239942388d6368846d7f19c8cf","ref":"refs/heads/master","pushedAt":"2024-03-19T18:30:16.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Merge pull request #110 from martinghunt/ena_fixes\n\nAdd task dl_and_run; rename ena options","shortMessageHtmlLink":"Merge pull request #110 from martinghunt/ena_fixes"}},{"before":"2900674aa2996aa1801c5e6fbbe2b1b0bd1e11d1","after":"c9889959ed7e57b62a2f80d20223ec5be4b14066","ref":"refs/heads/master","pushedAt":"2024-03-18T16:41:58.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Merge pull request #109 from martinghunt/ena_fixes\n\nENA fixes","shortMessageHtmlLink":"Merge pull request #109 from martinghunt/ena_fixes"}},{"before":"94466d79560d1480cc003bb56e782bebfe31032c","after":"2900674aa2996aa1801c5e6fbbe2b1b0bd1e11d1","ref":"refs/heads/master","pushedAt":"2024-02-29T21:21:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"iqbal-lab","name":"Zamin Iqbal","path":"/iqbal-lab","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6476513?s=80&v=4"},"commit":{"message":"Update README.md - adding brief description","shortMessageHtmlLink":"Update README.md - adding brief description"}},{"before":"14d36b1a291ac9875ed00bff6ea6c3a8d30e57af","after":"94466d79560d1480cc003bb56e782bebfe31032c","ref":"refs/heads/master","pushedAt":"2023-06-06T15:35:49.615Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Tweak logging from subprocesses","shortMessageHtmlLink":"Tweak logging from subprocesses"}},{"before":"26e40ae48e69c9ccdc012390b6266d6873519cfb","after":"14d36b1a291ac9875ed00bff6ea6c3a8d30e57af","ref":"refs/heads/master","pushedAt":"2023-05-26T15:17:59.064Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Version bump 1.1.0","shortMessageHtmlLink":"Version bump 1.1.0"}},{"before":"364308b66a1e1351b6e30ec60d7f3013db42fe7e","after":"26e40ae48e69c9ccdc012390b6266d6873519cfb","ref":"refs/heads/master","pushedAt":"2023-05-26T10:28:49.980Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Merge pull request #107 from martinghunt/illumina_unpaired\n\nIllumina unpaired","shortMessageHtmlLink":"Merge pull request #107 from martinghunt/illumina_unpaired"}},{"before":"c387f984162e27d3acf8ff1b51f1e2af7f6f93f2","after":"364308b66a1e1351b6e30ec60d7f3013db42fe7e","ref":"refs/heads/master","pushedAt":"2023-05-18T17:10:54.670Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"fix typo in docker pull command","shortMessageHtmlLink":"fix typo in docker pull command"}},{"before":"0012698c4cafa1a968ab068ef9bec63bb24f776b","after":"c387f984162e27d3acf8ff1b51f1e2af7f6f93f2","ref":"refs/heads/master","pushedAt":"2023-05-18T16:34:09.165Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Version bump 1.0.0","shortMessageHtmlLink":"Version bump 1.0.0"}},{"before":"9d5416d3a0bb1a0ecd7ff06e76ae8dc658a99710","after":"0012698c4cafa1a968ab068ef9bec63bb24f776b","ref":"refs/heads/master","pushedAt":"2023-05-18T16:28:01.723Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Run black, fix pyflakes warnings","shortMessageHtmlLink":"Run black, fix pyflakes warnings"}},{"before":"961f957ce23525b970987f24b50ae4ec5f7797b3","after":"9d5416d3a0bb1a0ecd7ff06e76ae8dc658a99710","ref":"refs/heads/master","pushedAt":"2023-05-18T15:51:01.790Z","pushType":"pr_merge","commitsCount":19,"pusher":{"login":"iqbal-lab","name":"Zamin Iqbal","path":"/iqbal-lab","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6476513?s=80&v=4"},"commit":{"message":"Merge pull request #105 from iqbal-lab-org/refactor_2023\n\nRefactor 2023","shortMessageHtmlLink":"Merge pull request #105 from iqbal-lab-org/refactor_2023"}},{"before":"6434c2b421483dcd46e12b791437c66342e2b349","after":"5242f4401b5e76b48254f3633b7840b89b396757","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-18T14:59:52.633Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"cylon commit 57d559a76254b0b95785f7c02fa58ef806713e01","shortMessageHtmlLink":"cylon commit 57d559a76254b0b95785f7c02fa58ef806713e01"}},{"before":"424c43ea2030eca0b4d80c7b56f7db8011324d4b","after":"6434c2b421483dcd46e12b791437c66342e2b349","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-18T13:02:38.818Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Fix cutoff for warning about strand bias","shortMessageHtmlLink":"Fix cutoff for warning about strand bias"}},{"before":"55d43eda67083646723a801896616aedba88ca94","after":"424c43ea2030eca0b4d80c7b56f7db8011324d4b","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-17T16:18:29.559Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Update readme for new usage","shortMessageHtmlLink":"Update readme for new usage"}},{"before":"83afe41540b5853cf7b7c0f06fc6b86fe140fd08","after":"55d43eda67083646723a801896616aedba88ca94","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-17T15:55:21.195Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Add --max_scheme_ratio; default --min_scheme_score 250","shortMessageHtmlLink":"Add --max_scheme_ratio; default --min_scheme_score 250"}},{"before":"7c2604141f768a1b4ccfdb07ca1b4b077db35a8d","after":"83afe41540b5853cf7b7c0f06fc6b86fe140fd08","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-17T15:33:32.259Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Fix failing scheme sim test","shortMessageHtmlLink":"Fix failing scheme sim test"}},{"before":"9a107fdec59facdc7ca4a4aefaf4f59eed5c22e5","after":"7c2604141f768a1b4ccfdb07ca1b4b077db35a8d","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-17T14:51:37.643Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Add scheme artic v5.2.0_1200","shortMessageHtmlLink":"Add scheme artic v5.2.0_1200"}},{"before":"ca7f252c2c41a12fed7b8fac8c4cd71ce45e4546","after":"9a107fdec59facdc7ca4a4aefaf4f59eed5c22e5","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-17T14:37:25.408Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Add scheme artic v5.0-5.3.2_400","shortMessageHtmlLink":"Add scheme artic v5.0-5.3.2_400"}},{"before":"e8b02f232fd3499d64b05e8a65756a20f439e2f3","after":"ca7f252c2c41a12fed7b8fac8c4cd71ce45e4546","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-17T08:31:22.335Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Add scheme varskip","shortMessageHtmlLink":"Add scheme varskip"}},{"before":"8d80f899930e9e86f1e7a776701dc49f2baf3a14","after":"e8b02f232fd3499d64b05e8a65756a20f439e2f3","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-16T13:18:14.715Z","pushType":"push","commitsCount":4,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"cylon commit 5d75a0738a0a280ef42b0f79e5d87fc3b5000afe","shortMessageHtmlLink":"cylon commit 5d75a0738a0a280ef42b0f79e5d87fc3b5000afe"}},{"before":"2a7a55dda5e3081721f545fc007b507d8800354f","after":"8d80f899930e9e86f1e7a776701dc49f2baf3a14","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-09T14:47:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Force indel-as-ref start/end gaps to be N","shortMessageHtmlLink":"Force indel-as-ref start/end gaps to be N"}},{"before":"81e74e987e135bcfa47965c7b1f41d0fc094def2","after":"2a7a55dda5e3081721f545fc007b507d8800354f","ref":"refs/heads/refactor_2023","pushedAt":"2023-05-09T13:24:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martinghunt","name":null,"path":"/martinghunt","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4937411?s=80&v=4"},"commit":{"message":"Tweak help strings","shortMessageHtmlLink":"Tweak help strings"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEYjLfegA","startCursor":null,"endCursor":null}},"title":"Activity ยท iqbal-lab-org/viridian"}