From ee094f92ee4ec81eddc120f6cf7ffaef2fadf499 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 24 Nov 2025 04:14:05 +0000
Subject: [PATCH] Bump actions/checkout from 5 to 6

Bumps [actions/checkout](https://github.com/actions/checkout) from 5 to 6.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v5...v6)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 .github/workflows/add_source_to_release.yml |  2 +-
 .github/workflows/build_container.yml       |  2 +-
 .github/workflows/build_docs.yml            |  4 ++--
 .github/workflows/build_wheels.yml          |  2 +-
 .github/workflows/ci.yml                    | 10 +++++-----
 .github/workflows/release.yml               |  6 +++---
 6 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/.github/workflows/add_source_to_release.yml b/.github/workflows/add_source_to_release.yml
index f5a025f5..f843a24f 100644
--- a/.github/workflows/add_source_to_release.yml
+++ b/.github/workflows/add_source_to_release.yml
@@ -17,7 +17,7 @@ jobs:
 
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive
diff --git a/.github/workflows/build_container.yml b/.github/workflows/build_container.yml
index 2165283e..93a506af 100644
--- a/.github/workflows/build_container.yml
+++ b/.github/workflows/build_container.yml
@@ -17,7 +17,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout Repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Login to GitHub Container Registry
         run: echo "${{ secrets.GITHUB_TOKEN }}" | docker login ghcr.io -u iqtree --password-stdin
diff --git a/.github/workflows/build_docs.yml b/.github/workflows/build_docs.yml
index 0162e34b..aa177b4c 100644
--- a/.github/workflows/build_docs.yml
+++ b/.github/workflows/build_docs.yml
@@ -22,7 +22,7 @@ jobs:
     name: Fetch or Build IQ-TREE Static Library
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive
@@ -40,7 +40,7 @@ jobs:
     needs: build-iqtree
     steps:
       - name: Checkout Repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive
diff --git a/.github/workflows/build_wheels.yml b/.github/workflows/build_wheels.yml
index b7c27a76..3f9d25f5 100644
--- a/.github/workflows/build_wheels.yml
+++ b/.github/workflows/build_wheels.yml
@@ -30,7 +30,7 @@ jobs:
           platform_id: win_amd64
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 94d6b05e..b031ef0f 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -24,7 +24,7 @@ jobs:
         os: [ubuntu-latest, macos-15-intel, macos-15, windows-latest] # Intel linux, Intel Mac, ARM Mac, Windows
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive
@@ -46,7 +46,7 @@ jobs:
         os: [ubuntu-latest, macos-15-intel, macos-15, windows-latest] # Intel linux, Intel Mac, ARM Mac, Windows
         python-version: ["3.11", "3.12", "3.13"]
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive
@@ -102,7 +102,7 @@ jobs:
         os: [ubuntu-latest]
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
 
@@ -127,7 +127,7 @@ jobs:
         os: [ubuntu-latest]
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
 
@@ -152,7 +152,7 @@ jobs:
         os: [ubuntu-latest]
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index ee388cef..b1d7ce18 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -30,7 +30,7 @@ jobs:
           platform_id: win_amd64
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive
@@ -87,7 +87,7 @@ jobs:
     name: Fetch or Build IQ-TREE Static Library
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive
@@ -105,7 +105,7 @@ jobs:
     needs: build-iqtree
     steps:
       - name: Checkout Repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
           submodules: recursive