deploy_bookdown.yml

# From: https://orchid00.github.io/actions_sandbox/websites-using-pkgdown-bookdown-and-blogdown.html#deploy-bookdown
# To Do:
# 1. Create a personal access token (PAT) labeled `EMAIL`: https://github.com/settings/tokens; save the value in LastPass
# 2. Create a secret labeled `EMAIL` in the repo (Settings -> Security -> Secrets -> Actions), and copy the PAT for `EMAIL` into the secret labeled `EMAIL`

on:
  push:
     branches:
       - main

name: build-book

jobs:
  bookdown:
    name: Render-Book
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - name: Checkout Repository
        uses: actions/checkout@v3 # update
        
      - name: Setup R
        uses: r-lib/actions/setup-r@v2 # update
        
      - name: Session info
        run: Rscript -e 'sessionInfo()'
        
      - name: Setup pandoc
        uses: r-lib/actions/setup-pandoc@v2 # update
        
      - name: Install libcurl on Linux
        if: runner.os == 'Linux'
        run: sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev
        
      - name: Install package dependencies
        uses: r-lib/actions/setup-r-dependencies@v2 # update
        
      - name: Install remote packages
        run: |
         #Rscript -e 'install.packages("remotes")'
         Rscript -e 'remotes::install_git("https://research-git.uiowa.edu/PetersenLab/petersenlab.git")'
         Rscript -e "remotes::install_github('evwalz/uroc')"
         Rscript -e "remotes::install_github('ddueber/dmacs')"
         #Rscript -e "remotes::install_deps(dependencies = TRUE)"
        
      - name: Render Book
        run: Rscript -e 'bookdown::render_book("index.Rmd")'
        
      - uses: actions/upload-artifact@v3 # update
        with:
          name: _book
          path: _book/

# Need to first create an empty gh-pages branch
# see https://pkgdown.r-lib.org/reference/deploy_site_github.html
# and also add secrets for a GH_PAT and EMAIL to the repository
# gh-action from Cecilapp/GitHub-Pages-deploy
  checkout-and-deploy:
   runs-on: ubuntu-latest
   needs: bookdown
   steps:
     - name: Checkout
       uses: actions/checkout@v3 # update

     - name: Download artifact
       uses: actions/download-artifact@v3 # update
       with:
         # Artifact name
         name: _book # optional
         # Destination path
         path: _book # optional

     - name: Deploy to GitHub Pages
       uses: Cecilapp/GitHub-Pages-deploy@v3 # update
       env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
          build_dir: _book/ # "_site/" by default
          email: ${{ secrets.EMAIL }} # must be a verified email