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ISB-CGC

Democratizing access to cancer data in the cloud

Contained within this documentation are descriptions of ISB-CGC features along with guides and tips for exploring data sets hosted on the Google Cloud Platform.

overview_image.png

The ISB-CGC aims to serve the needs of a broad range of cancer researchers ranging from scientists or clinicians who prefer to use an interactive web-based application to access and explore the rich TCGA, TARGET, CCLE, COSMIC and other data sets, to computational scientists who want to write their own custom scripts using languages such as R or Python, accessing the data through APIs, and to algorithm developers who wish to spin up thousands of virtual machines to analyze hundreds of terabytes of sequence data.

-- the ISB-CGC team

.. toctree::
   :hidden:
   :maxdepth: 1
   :caption: GETTING STARTED

   sections/About-ISB-CGC
   sections/ExploringISB-CGC
   sections/HowToGetStartedonISB-CGC
   sections/HowToGetStarted-Analysis
   sections/HowtoRequestCloudCredits
   sections/BestPractices
   sections/Benefits
   sections/office_hours

.. toctree::
   :hidden:
   :maxdepth: 1
   :caption: USER GUIDE

   sections/Hosted-Data
   sections/BigQueryTableSearchUI
   sections/BigQuery
   sections/Web-UI
   sections/DataExplorer
   sections/DataBrowser
   sections/data/Mitelman_about
   sections/the_TP53_database
   sections/ProgrammaticAccess
   sections/data/TCGA_Data_Security
   sections/Gaining-Access-To-Controlled-Access-Data

.. toctree::
   :hidden:
   :maxdepth: 1
   :caption: MORE INFORMATION

   sections/HowTos
   sections/RegulomeExplorerNotebooks
   sections/MachineLearningNotebooks
   sections/TutorialsAndHow-ToGuides
   sections/Releases
   sections/Quick-links-updated
   sections/FAQ
   sections/Support