From 9f7dac9b5c72b58ee8389b550a6fb4a9b731e8d2 Mon Sep 17 00:00:00 2001 From: Isin Altinkaya Date: Mon, 21 Aug 2023 19:45:57 +0200 Subject: [PATCH 1/2] [feat] add ibd gl and ibdseq methods --- argStruct.cpp | 54 +- argStruct.h | 19 + ibd.cpp | 988 +++++++++++++++++++++ ibd.h | 75 ++ ngsAMOVA.cpp | 6 + paramStruct.cpp | 9 + paramStruct.h | 5 + shared.h | 3 +- test/Makefile | 15 + test/reference/test1_ibd_100_doIbd2.ibd | 15 + test/reference/test2_ibd_1000_doIbd1.ibd | 6 + test/test1_ibd_100.vcf | 100 +++ test/test2_ibd_1000_err0.vcf | 1000 ++++++++++++++++++++++ vcfReader.cpp | 14 +- vcfReader.h | 5 +- 15 files changed, 2301 insertions(+), 13 deletions(-) create mode 100644 ibd.cpp create mode 100644 ibd.h create mode 100644 test/reference/test1_ibd_100_doIbd2.ibd create mode 100644 test/reference/test2_ibd_1000_doIbd1.ibd create mode 100644 test/test1_ibd_100.vcf create mode 100644 test/test2_ibd_1000_err0.vcf diff --git a/argStruct.cpp b/argStruct.cpp index bab9083..cfa83ba 100644 --- a/argStruct.cpp +++ b/argStruct.cpp @@ -44,6 +44,7 @@ argStruct *argStruct_get(int argc, char **argv) { // -doDxy : estimate Dxy // -doPhylo : do neighbor-joining // -doDist : estimate pairwise distance matrix + // -doIbd : detect IBD segments // TODO idea multilayer argument reading using LUTs // e.g. `-doAMOVA` in lut1 -> "args->doAMOVA" in lut2 ->integer in lut3 @@ -66,7 +67,9 @@ argStruct *argStruct_get(int argc, char **argv) { } else if (strcasecmp("-doDist", arv) == 0) { args->doDist = atoi(val); - } + } else if (strcasecmp("-doIbd", arv) == 0) { + args->doIbd = atoi(val); + } // ################################ // # INPUT FILES [--in-XXX] # @@ -345,6 +348,37 @@ argStruct *argStruct_get(int argc, char **argv) { else if (strcasecmp("--minInd", arv) == 0) args->minInd = atoi(val); + else if (strcasecmp("--min-af", arv) == 0){ + args->min_af = atof(val); + } + + + else if (strcasecmp("--ibdseq-errorprop", arv) == 0){ + args->ibdseq_errorprop = atof(val); + } + + else if (strcasecmp("--ibdseq-errormax", arv) == 0){ + args->ibdseq_errormax = atof(val); + } + + else if (strcasecmp("--ibdseq-minalleles", arv) == 0){ + args->ibdseq_minalleles = atoi(val); + if(args->ibdseq_minalleles<2){ + ERROR("--ibdseq-minalleles is set to %d. Allowed range of values is 2ibdseq_ibdlod= atof(val); + if(args->ibdseq_ibdlod<0){ + ERROR("--ibdseq-ibdlod must be a positive number."); + } + } + else if (strcasecmp("--ibdseq-ibdtrim", arv) == 0){ + args->ibdseq_ibdtrim= atof(val); + if(args->ibdseq_ibdtrim<0){ + ERROR("--ibdseq-ibdtrim must be a nonnegative number."); + } + } else if (strcasecmp("--em-tole", arv) == 0) args->tole = atof(val); @@ -457,10 +491,12 @@ void argStruct::check_arg_dependencies() { // 2: estimate distance matrix from genotypes // 3: read distance matrix from file - if (0 == doDist) { - fprintf(stderr, "\n\n-doDist 0: Nothing to do; will exit.\n\n"); - exit(0); - } else if (1 == doDist) { + //TODO + // if (0 == doDist) { + // fprintf(stderr, "\n\n-doDist 0: Nothing to do; will exit.\n\n"); + // exit(0); + // } else + if (1 == doDist) { LOG("-doDist 1, will estimate distance matrix from genotype likelihoods."); IO::requireArgFile(in_vcf_fn, "--in-vcf", "-doDist 1"); @@ -479,9 +515,11 @@ void argStruct::check_arg_dependencies() { if (0 != printDistanceMatrix) { ERROR("-doDist 3 cannot be used with --printDistanceMatrix.\n"); } - } else { - ERROR("-doDist %d is not a valid option.", doDist); - } + } + //TODO + // } else { + // ERROR("-doDist %d is not a valid option.", doDist); + // } //----------------------------------------------------------------------------------// // -doAMOVA diff --git a/argStruct.h b/argStruct.h index 6238602..759925f 100644 --- a/argStruct.h +++ b/argStruct.h @@ -168,6 +168,7 @@ struct argStruct { int doDxy = 0; int doPhylo = 0; int doDist = 0; + int doIbd = 0; int printAmovaTable = 0; int printDistanceMatrix = 0; @@ -184,6 +185,24 @@ struct argStruct { double tole = -1; int maxEmIter = -1; + + // ------------------------------------------------ + // VCF filters + double min_af = 0.0; + // ------------------------------------------------ + + + + // ------------------------------------------------ + // IBDSEQ method implementation + int ibdseq_minalleles=2; + double ibdseq_errormax=0.001; + double ibdseq_errorprop=0.25; + double ibdseq_ibdlod=3.0; + double ibdseq_ibdtrim=0.0; + + + int nThreads = 1; int seed = -1; int nBootstraps = 0; diff --git a/ibd.cpp b/ibd.cpp new file mode 100644 index 0000000..8d04967 --- /dev/null +++ b/ibd.cpp @@ -0,0 +1,988 @@ +#include "ibd.h" + +#include "vcfReader.h" + + +////////////////////////// +/// +/// +///// if (args->minInd ) does not work with doibd +/// +////////////////////////// + +const int dosePairIndex[3][3] = { {0,1,5}, {1,2,3}, {5,3,4} }; + +void readSites_doIbd(vcfData *vcfd, paramStruct *pars){ + + const int nInd=pars->nInd; + int skip_site = 0; + + int contig_i = -1; + int site_i = 0; + + char prev_contig[1024]; + int nSites_contig_i = 0; + + int* site2pos=(int*)malloc(BUF_NSITES*sizeof(int)); + for (int i=0;idoIbd==1){ + lngl=(double*) malloc(nInd*3*sizeof(double)); + for (int indi = 0; indi < nInd; indi++) { + const int lngls_ind_start = indi * 3; + for (int j = 0; j < 3; j++) { + lngl[lngls_ind_start + j] = NEG_INF; + } + } + } + + double* ibdScores_lut = NULL; + double* hbdScores_lut = NULL; + if(args->doIbd==2){ + ibdScores_lut = (double*) malloc(6 * sizeof(double)); + hbdScores_lut = (double*) malloc(3 * sizeof(double)); + + } + + + int *a1 = new int; + int *a2 = new int; + + + while (1 == (vcfd->records_next())) { + + + ASSERT(site_iget_contig_name(), sizeof(prev_contig)); + if (prev_contig[sizeof(prev_contig) - 1] != '\0') { + ERROR("Contig name is too long"); + } + site_i = 0; + } + + + // ** contig change ** + if (0 != strcmp(vcfd->get_contig_name(), prev_contig)) { + if (contig_i >= vcfd->nContigs) { + ERROR("Number of contigs in the VCF file header is larger than the number of contigs in the VCF file"); + } + + // if we skipped all sites in the previous contig, reuse contig_i index for the new contig + if (0 == nSites_contig_i) { + } else { + ++contig_i; + nSites_contig_i = 0; + } + + strncpy(prev_contig, vcfd->get_contig_name(), sizeof(prev_contig)); + if (prev_contig[sizeof(prev_contig) - 1] != '\0') { + ERROR("Contig name is too long"); + } + site_i = 0; + } + + + ASSERT(1 == bcf_is_snp(vcfd->rec)); + // if (1 != bcf_is_snp(vcfd->rec)) { + // skip_site=1; + // IO::vprint(2, "Skipping site at %s:%ld. Reason: VCF record is not a SNP.\n", vcfd->get_contig_name(), vcfd->rec->pos + 1); + // } + + ASSERT(0== read_site_with_alleles(contig_i, site_i, vcfd, pars, a1, a2)); + // int ret = read_site_with_alleles(contig_i, site_i, vcfd, pars, a1, a2); + // if (0 == ret) { + // skip_site = 0; + // } else if (1 == ret) { + // // 1 if 'contig:site' in VCF cannot be found in alleles file + // skip_site = 1; + // break; + // } else if (2 == ret) { + // // 2 if an a1 is not a single character + // skip_site = 1; + // break; + // } else { + // NEVER; + // } + + + get_data afData; + int n = bcf_get_info_float(vcfd->hdr, vcfd->rec, "AF", &afData.data, &afData.n); + if(n<=0){ + ERROR("AF tag not found."); + } + double maf = afData.data[0]; + if(maf>0.5){ + NEVER; + } + + // ------------------------------------------------ + // FILTER: --min-af + if (args->min_af>0){ + if(mafmin_af){ + skip_site=1; + NEVER; + break; + } + } + // ------------------------------------------------ + + skip_site=0; + + + double score=0.0; + + + /// ------------------- + if(args->doIbd==1){ + + // TODO XX + // + glData lgls(vcfd); + bool ind_is_missing[nInd]={false}; + + do { + int ret=read_site_with_alleles(contig_i,site_i,vcfd,pars,a1,a2); + + //TODO assume only 3 gls for now + // int a1a1 = bcf_alleles_get_gtidx(*a1, *a1);D + // int a1a2 = bcf_alleles_get_gtidx(*a1, *a2); + // int a2a2 = bcf_alleles_get_gtidx(*a2, *a2); + int a1a1=0; + int a1a2=1; + int a2a2=2; + + // if(site_i==0){ + // fprintf(stdout, "X,%d,%d,%d\n",a1a1,a1a2,a2a2); + // } + + for (int indi = 0; indi < nInd; indi++) { + if (1 == lgls.ind_data_isMissing(indi)) { + ind_is_missing[indi]=true; + }else{ + const int lngls_ind_start = indi * vcfd->nGT; + + if((lgls.ind_ptr(indi)[a1a1]==lgls.ind_ptr(indi)[a1a2]) && (lgls.ind_ptr(indi)[a1a1]==lgls.ind_ptr(indi)[a2a2]) ) { + + ind_is_missing[indi]=true; + }else{ + + lngl[lngls_ind_start + 0] = (double)LOG2LN(lgls.ind_ptr(indi)[a1a1]); + lngl[lngls_ind_start + 1] = (double)LOG2LN(lgls.ind_ptr(indi)[a1a2]); + lngl[lngls_ind_start + 2] = (double)LOG2LN(lgls.ind_ptr(indi)[a2a2]); + + + double mmax=lngl[lngls_ind_start+0]; + for(int ii=1;ii<3;ii++){ + if(lngl[lngls_ind_start+ii]>mmax){ + mmax=lngl[lngls_ind_start+ii]; + } + } + for(int ii=0;(!std::isinf(mmax))&&ii<3;ii++){ + lngl[lngls_ind_start+ii]-=mmax; + if(std::isnan(lngl[lngls_ind_start+ii])){ + fprintf(stderr,"mmax: %f\n",mmax); + exit(0); + } + } + + } + } + } + + // + bool isCor=false;//TODO + score=0.0; + + for (int i1 = 0; i1 < nInd; ++i1) { + for (int i2 = i1+1; i2 < nInd; ++i2) { + + if(ind_is_missing[i1]==true||ind_is_missing[i2]==true){ + ///if any ind in the pair is missing define LOD score of the pair at the locus as 0 + score=0.0; + }else{ + if (isCor==false){ + score=pars->ibd->ibdScore_GL(i1,i2,vcfd, pars, maf,site_i,lngl); + }else{ + NEVER; + // score=0.0; + } + } + + // fprintf(stdout, "VGL1,%d,%d,%d,%f\n",i1,i2,site_i,score); + // if(i1==0 && i2==1){ + // fprintf(stdout, "VGL1,%d,%d,%d,%f\n",i1,i2,site_i,score); + // } + + int pair_idx=nCk_idx(nInd,i1,i2); + pars->ibd->pairScores[pair_idx][site_i]=score; + // VALIDATION GL1 + + // if(i1==0 && i2==1 && site_i==0){ + // fprintf(stdout, "VGL1,%d,%d,%d,%f\n",i1,i2,site_i,score); + // } + + + } + } + + } while (0); + + // TODO XX + + + + }else if (args->doIbd==2){ + + // TODO XX + // + + + + // precalculate the dose pair ibd scores + // + // getIbdScores + int nIndices = 6; + int N_DOSES=3; + int index=-1; + for (int dose1=0; dose1ibd->ibdScore(dose1, dose2, maf); + ibdScores_lut[dosePairIndex[dose2][dose1]]=pars->ibd->ibdScore(dose1, dose2, maf); + } + } + + // getHbdScores + for (int dose=0; doseibd->hbdScore(dose, maf); + } + + + do { + + vcfd->site_gts_get(*a1, *a2); + if (!vcfd->gts->pass_minInd_threshold(nInd)) { + skip_site = 1; + break; + } + + + for (int ind = 0; ind < nInd; ++ind) { + + int ind_nder = vcfd->gts->get_n_derived_alleles_ind(ind); + if (-2 == ind_nder) { + // individual's allelic state cannot be found in d.allele + NEVER; + } + if (-1 == ind_nder) { + continue; + } + } + + + + // ------------------------------------------------ + // FILTER: --ibdseq-minalleles + // + bool has_ac_tag=false; + // First, if exists try using AC tag for this filter + // AC : allele count in genotypes, for each ALT allele, in the same order as listed + get_data acData; + int nac = bcf_get_info_int32(vcfd->hdr, vcfd->rec, "AC", &acData.data, &acData.n); + if(nac<=0){ + has_ac_tag=false; + // ERROR("AC tag not found."); + }else{ + has_ac_tag=true; + if(acData.data[0] < args->ibdseq_minalleles){ + IO::vprint(2, "Skipping site at %s:%ld. Reason: --ibdseq-minalleles filter is not met."); + skip_site=1; + break; + } + } + if(false==has_ac_tag){ + int sum_nder=0; + for (int ind = 0; ind < nInd; ++ind) { + int ind_nder = vcfd->gts->get_n_derived_alleles_ind(ind); + if (ind_nder!=-1){ + sum_nder+=ind_nder; + } + } + if(sum_nder < args->ibdseq_minalleles){ + IO::vprint(2, "Skipping site at %s:%ld. Reason: --ibdseq-minalleles filter is not met."); + skip_site=1; + break; + } + } + // ------------------------------------------------ + + score=0.0; + bool isCor=false;//TODO + + for (int i1 = 0; i1 < nInd; ++i1) { + for (int i2 = i1+1; i2 < nInd; ++i2) { + + if(i1==i2){ + NEVER; +// + // int dose=vcfd->gts->get_n_derived_alleles_ind(i1); +// + // ASSERT(dose>=0); +// + // if (dose>=0 && (isCor==false || dose==1) ) { + // score=hbdScores_lut[dose]; + // }else { + // score=0.0; + // } +// + // pars->ibd->selfScores[i1][site_i]=score; + // VALIDATION1 + // fprintf(stdout, "V1,%d,%d,%d,%d,%d,%f\n",dose,dose,i1,i2,site_i,score); + + }else{ + + int dose1=vcfd->gts->get_n_derived_alleles_ind(i1); + int dose2=vcfd->gts->get_n_derived_alleles_ind(i2); + + + if(dose1==-1||dose2==-1){ + score=0.0; + }else{ + + + // TODO HERE we dont have this in gl method + bool notIbs = (dose1==0 && dose2==2) || (dose1==2 && dose2==0); + if ( (notIbs || isCor==false) && dose1>=0 && dose2>=0 ) { + score=ibdScores_lut[dosePairIndex[dose1][dose2]]; + }else { + score=0.0; + } + + int pair_idx=nCk_idx(nInd,i1,i2); + pars->ibd->pairScores[pair_idx][site_i]=score; + // VALIDATION1 + // dose1,dose2,i1,i2,site,score + // fprintf(stdout, "V1,%d,%d,%d,%d,%d,%f\n",dose1,dose2,i1,i2,site_i,score); + // VALIDATION GT1 + // if(i1==0 && i2==1){ + // fprintf(stdout, "VGT1,%d,%d,%d,%f\n",i1,i2,site_i,score); + // } + // NEVER; + } + + } + + + } + } + + } while (0); + // + // TODO XX + }else{ + NEVER; + } + /// ------------------- + + site2pos[site_i]=vcfd->rec->pos+1; + + + if (skip_site == 1) { + IO::vprint(1, "Skipping site at %s:%ld", vcfd->get_contig_name(), vcfd->rec->pos + 1); + pars->totSites++; + site_i++; + + continue; + } + + + ++site_i; + pars->nSites++; + pars->totSites++; + nSites_contig_i++; + + + } + + delete a1; + delete a2; + + get_ibd_segments(vcfd->get_contig_name(), pars,site2pos); + + + BEGIN_LOGSECTION; + LOG("Finished reading sites."); + LOG("Read %d (out of %d) contigs from the VCF file.", contig_i + 1, vcfd->nContigs); + LOG("Number of contigs retained: %d", contig_i + 1); + LOG("Number of contigs skipped: %d", vcfd->nContigs - contig_i - 1); + LOG("Total number of sites processed: %lu", pars->totSites); + LOG("Total number of sites skipped for all individual pairs: %lu", pars->totSites - pars->nSites); + LOG("Total number of sites retained: %lu", pars->nSites); + END_LOGSECTION; + + FREE(site2pos); + if(NULL!=ibdScores_lut){ + FREE(ibdScores_lut); + } + + + if(NULL!=hbdScores_lut){ + FREE(hbdScores_lut); + } + + if(NULL!=lngl){ + FREE(lngl); + } + +} + +int get_ibd_segments(const char* contigName, paramStruct *pars, int* site2pos){ + + double maxSum=0.0; + int start=0; + int end=0; + + double thisSum=0.0; + double thisScore=0.0; + int pair_idx=-1; + const int nInd=pars->nInd; + + for (int i1 = 0; i1 < nInd; ++i1) { + for (int i2 = i1+1; i2 < nInd; ++i2) { + + if(i1==i2){ + NEVER; + pair_idx=-1; + }else{ + pair_idx=nCk_idx(nInd,i1,i2); + } + + thisSum=0.0; + maxSum=0.0; + start=0; + end=0; + + //TODO work with multiple contigs + + for (int site=0;sitenSites;site++){ + + thisScore=0.0; + + if(pair_idx==-1){ + NEVER; + // thisScore=pars->ibd->selfScores[i1][site]; + }else{ + thisScore=pars->ibd->pairScores[pair_idx][site]; + } + + thisSum+=thisScore; + + // VALIDATION + // if(i1==0&&i2==1){ + // fprintf(stdout,"V4,%d,%d,%ld\n",i1,i2,site,thisScore,thisSum,maxSum); + // fprintf(stdout,"%d,%d,%ld,%f\n",i1,i2,site,thisScore); + // fprintf(stdout,"V3,%d,%d,%ld,%f,%f\n",i1,i2,site,maxSum,thisSum); + // fprintf(stdout,"V4,%d,%d,%ld,%f,%f,%f\n",i1,i2,site,thisScore,thisSum,maxSum); + // } + + if(thisSum > maxSum) { + maxSum = thisSum; + end = site; + }else if (thisSum <= 0.0) { + if (maxSum >= args->ibdseq_ibdlod) { + start = trimmedStart(pars,i1, i2, start, end); + end = trimmedEnd(pars,i1, i2, start, end); + + if (end > start) { + + if(-1==pair_idx){ //hbd + NEVER; + // fprintf(hbdOut,"%d\t%d\t%s\t%d\t%d\t%f\n",i1,i2,contigName,site2pos[start],site2pos[end], maxSum); + }else{ //ibd +#if 1 + fprintf(stdout,"%d\t%d\t%s\t%d\t%d\t%f\n",i1,i2,contigName,site2pos[start],site2pos[end], maxSum); +#endif + } + } + + } + start = site + 1; + end = start; + thisSum = 0.0; + maxSum = 0.0; + } + + + }// sites loop + + if (maxSum >= args->ibdseq_ibdlod) { + start = trimmedStart(pars,i1, i2, start, end); + end = trimmedEnd(pars,i1, i2, start, end); + if (end > start) { + + if(-1==pair_idx){ //hbd + // fprintf(hbdOut,"%d\t%d\t%s\t%d\t%d\t%f\n",i1,i2,contigName,site2pos[start],site2pos[end], maxSum); + NEVER; + }else{ //ibd +#if 1 + fprintf(stdout,"%d\t%d\t%s\t%d\t%d\t%f\n",i1,i2,contigName,site2pos[start],site2pos[end], maxSum); +#endif + } + } + } + + + }// i2 loop + }// i1 loop + +return 0; +} + + + + +int trimmedStart(paramStruct* pars, const int i1, const int i2, const int start, const int end) { + if (args->ibdseq_ibdtrim <= 0.0) { + return(start); + } + double sum = 0.0; + int index = start; + + int pair_idx=-1; + if(i1==i2){ + NEVER; + pair_idx=-1; + }else{ + pair_idx=nCk_idx(pars->nInd,i1,i2); + } + + while (index <= end && sum < args->ibdseq_ibdtrim) { + // sum += score(s1, s2, index, vcfData.isCorrelated(index)); + if(pair_idx==-1){ + NEVER; + // sum+=pars->ibd->selfScores[i1][index]; + }else{ + sum+=pars->ibd->pairScores[pair_idx][index]; + } + ++index; + } + return(index - 1); +} + +int trimmedEnd(paramStruct* pars, const int i1, const int i2, const int start, const int end) { + if (args->ibdseq_ibdtrim <= 0.0) { + return(end); + } + double sum = 0.0; + int index = end; + + int pair_idx=-1; + if(i1==i2){ + NEVER; + pair_idx=-1; + }else{ + pair_idx=nCk_idx(pars->nInd,i1,i2); + } + + while (index >= start && sum < args->ibdseq_ibdtrim) { + // sum += score(s1, s2, index, vcfData.isCorrelated(index)); + if(pair_idx==-1){ + NEVER; + // sum+=pars->ibd->selfScores[i1][index]; + }else{ + sum+=pars->ibd->pairScores[pair_idx][index]; + } + --index; + } + return(index + 1); +} + + +double* ibdStruct::errorArray(double e){ + double* errArray = (double*) malloc(5 * sizeof(double)); + double x = 1.0 - e; + // errArray[j] = (errArray[j-1] * e) / x;// unroll + errArray[0] = x*x*x*x; + errArray[1] = (e) * (x*x*x); + errArray[2] = (e*e) * (x*x); + errArray[3] = (e*e*e) * (x); + errArray[4] = (e*e*e*e); + return (errArray); +} + +double ibdStruct::errorRate(double fB){ + double e = args->ibdseq_errorprop * fB; + return(MIN(e,args->ibdseq_errormax)); + // return(e); //TEST +} + +double ibdStruct::ibdLike(int dose1, int dose2, double err, double pB){ + + double ret=0.0; + double pA = 1.0 - pB; + + double* e= NULL; + + if(err==args->ibdseq_errormax) { + e=(double*) malloc (5 * sizeof (double)); + for(int i=0;i<5;++i){ + e[i]=this->maxErrorArray[i]; + } + }else{ + e=this->errorArray(err); + } + + switch (dose1 + dose2){ + case 0: + ret=(e[0]*(pA*pA*pA) + 2*e[1]*pA*pA*pB + e[2]*pA*pB); + break; + + case 1: + ret=(2*(e[0]*pA*pA*pB + e[1]*(pA*pB + 2*(pA*pA*pA)) + 3*e[2]*pA*pB)); + break; + + case 2: + if (dose1==dose2) { + ret=((e[0]+4*e[1] + 2*e[2])*pA*pB + 4*e[2]*((pA*pA*pA) + (pB*pB*pB))); + } + else { + ret=(2*( (e[1]+e[2]+e[3])*pA*pB + e[2]*((pA*pA*pA) + (pB*pB*pB)) )); + } + break; + + case 3: + ret=(2*(e[0]*pA*pB*pB + 2*e[1]*(pB*pB*pB) + (e[1] + 3*e[2] + e[3])*pA*pB + 2*e[3]*(pA*pA*pA) )); + break; + + case 4: + ret=(( e[0]*(pB*pB*pB) + 2*e[1]*pA*pB*pB + e[2]*pA*pB + 2*e[3]*pA*pA*pB + e[4]*(pA*pA*pA) )); + break; + + default: NEVER; + + } + FREE(e); + return(ret); + +} + +// IBD = 1 +double ibdStruct::ibdLike_GL(const int idx, vcfData* vcfd, paramStruct* pars, double fm){ + + double fM=1.0-fm; + // + // double M[9] = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0}; + // M[0]=fM*fM*fM; // A + // M[1]=fM*fM * fm; // B + // // M[2]=0.0 // C + // M[3]= M[1]; // D + // M[4]=fM*fm; // E + // M[5]=fM*fm*fm; // F + // // M[6]=0.0; // G + // M[7]=M[5]; // H + // M[8]=fm*fm*fm; // I + + switch (idx){ + + case 0: + return(fM*fM*fM); + + case 1: + return(fM*fM * fm); + + case 2: + return (0.0); + + case 3: + return(fM*fM * fm); + + case 4: + return (fM*fm); + + case 5: + return (fM*fm*fm); + + case 6: + return (0.0); + + case 7: + return (fM*fm*fm); + + case 8: + return (fm*fm*fm); + + + default: NEVER; + + } + + + +} + + +double ibdStruct::nullLike_GL(const int idx, vcfData* vcfd, paramStruct* pars,double fm){ + + double fM=1.0-fm; + + // double M[9] = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0}; + // M[0]=fM*fM*fM; // A + // M[1]=fM*fM * fm; // B + // // M[2]=0.0 // C + // M[3]= M[1]; // D + // M[4]=fM*fm; // E + // M[5]=fM*fm*fm; // F + // // M[6]=0.0; // G + // M[7]=M[5]; // H + // M[8]=fm*fm*fm; // I + + switch (idx){ + + case 0: + return(fM*fM*fM*fM); + + case 1: + return(2*fM*fM*fM*fm); + + case 2: + return (fM*fM*fm*fm); + + case 3: + return (2*fM*fM*fM*fm); + + case 4: + return (4*fM*fM*fm*fm); + + case 5: + return (2*fM*fm*fm*fm); + + case 6: + return (fM*fM*fm*fm); + + case 7: + return (2*fM*fm*fm*fm); + + case 8: + return (fm*fm*fm*fm); + + default: NEVER; + + } + +} + + + +double ibdStruct::ibdScore_GL(const int i1, const int i2, vcfData* vcfd, paramStruct* pars, const double fa, const size_t site_i, double* lngl){ + + + //TODO missing gls check + + double r=0.0; + + double i1gl1=lngl[(i1*vcfd->nGT)+0]; + double i1gl2=lngl[(i1*vcfd->nGT)+1]; + double i1gl3=lngl[(i1*vcfd->nGT)+2]; + if((i1gl1==i1gl2)&&(i1gl1==i1gl3)){//TODO delme + NEVER; + } + + double i2gl1=lngl[(i2*vcfd->nGT)+0]; + double i2gl2=lngl[(i2*vcfd->nGT)+1]; + double i2gl3=lngl[(i2*vcfd->nGT)+2]; + if((i2gl1==i2gl2)&&(i2gl1==i2gl3)){//TODO delme + NEVER; + } + + double GLS[9] = {0.0}; + GLS[0]=exp(i1gl1+i2gl1); + GLS[1]=exp(i1gl2+i2gl1); + GLS[2]=exp(i1gl3+i2gl1); + GLS[3]=exp(i1gl1+i2gl2); + GLS[4]=exp(i1gl2+i2gl2); + GLS[5]=exp(i1gl3+i2gl2); + GLS[6]=exp(i1gl1+i2gl3); + GLS[7]=exp(i1gl2+i2gl3); + GLS[8]=exp(i1gl3+i2gl3); + + // if(i1==0 && i2==1 && site_i==0){ +// fprintf(stderr,"site:%ld i1:%d i2:%d i1gl1:%f i1gl2:%f i1gl3:%f i2gl1:%f i2gl2:%f i2gl3:%f\n",site_i,i1,i2,i1gl1,i1gl2,i1gl3,i2gl1,i2gl1,i1gl3); + // } + + double m=0.0; + double n=0.0; + for(int i=0;i<9;++i){ + if(GLS[i]!=0.0){ + +// fprintf(stderr,"site:%ld i1:%d i2:%d i1gl1:%f i1gl2:%f i1gl3:%f i2gl1:%f i2gl2:%f i2gl3:%f\n",site_i,i1,i2,i1gl1,i1gl2,i1gl3,i2gl1,i2gl1,i1gl3); + + m+=GLS[i]*ibdLike_GL(i,vcfd,pars,fa); + n+=GLS[i]*nullLike_GL(i,vcfd,pars,fa); + } + } + + + + ASSERT(0.0!=n); + ASSERT(0.0!=m); + + r=(double) (m/n); + + ASSERT(r>0.0); + + r=(double) log10(r); + return r; +} + +double ibdStruct::nullLike(int dose1, int dose2, double fB){ + + double fA = 1.0 - fB; + + switch (dose1 + dose2) { + case 0: + return (fA*fA*fA*fA); + + case 1: + return (4*(fA*fA*fA) * fB); + + case 2: + if (dose1==dose2) { + return ((2*fA*fB)*(2*fA*fB)); + } + else { + return ((fA*fB)*(fA*fB))+((fA*fB)*(fA*fB)); + } + + case 3: + return (4*fA*(fB*fB*fB)); + + case 4: + return (fB*fB*fB*fB); + + default: + NEVER; + } + +} + +double estimate_true_maf(double fB, double errorRate){ + // return (fB);//TEST + return (( fB - errorRate ) / (1.0 - 2 * errorRate)); +} + + +double ibdStruct::ibdScore(const int dose1, const int dose2, const double fB){ + if(dose1<0 || dose2<0){ + NEVER; + // unknown dose + return(0.0); + } + ASSERT(fB<=0.5); + + double e = this->errorRate(fB); + double pB = estimate_true_maf(fB, e); + double r = ibdLike(dose1, dose2, e, pB) / nullLike(dose1, dose2, fB); + return log10(r); +} + + +double ibdStruct::hbdScore(int dose, double fB){ + ASSERT(fB > 0.0 && fB < 1.0); + ASSERT(dose<3 && dose>-1); + if(dose<0){ + NEVER; + // return 0.0; + } + + double e = this->errorRate(fB); + double fA = 1.0 - fB; + double pB = estimate_true_maf(fB, e); + double pA = 1.0 - pB; + switch (dose) { + case 0: return log10((pA + e*e*pB)/(fA*fA)); + case 1: return log10( e*(1-e)/(fA*fB) ); + case 2: return log10( (e*e*pA + pB)/(fB*fB) ); + default: NEVER; + } + +} + + +// assuming N_DOSES=3 +// index[0][0]=0; +// index[0][1]=1; +// index[0][2]=5; +// index[1][0]=1; +// index[1][1]=2; +// index[1][2]=3; +// index[2][0]=5; +// index[2][1]=3; +// index[2][2]=4; + + + + + +// void ibdStruct::add_doseData(const int site_i,const int ind_i, const int dose){ +// +// this->doseData[site_i][ind_i]=dose; +// } +// + +ibdStruct::ibdStruct(vcfData* vcfd, paramStruct* pars){ + + + this->nInd=vcfd->nInd; + if(args->doIbd==2){ + this->maxErrorArray = errorArray(args->ibdseq_errormax); + } + + // ---------- + // // nIndices=6 from ibdseq + // ibdScores[nIndices][nMarkers] + this->ibdScores = (double*) malloc(6 * sizeof(double)); + + this->hbdScores = (double*) malloc(3 * sizeof(double)); + + + this->pairScores = (double**) malloc(pars->nIndCmb * sizeof(double*)); + for (size_t i=0;inIndCmb;++i){ + this->pairScores[i]=(double*)malloc(BUF_NSITES*sizeof(double)); + } + + // this->selfScores = (double**) malloc(pars->nInd * sizeof(double*)); + // for (size_t i=0;inInd;++i){ + // this->selfScores[i]=(double*)malloc(BUF_NSITES*sizeof(double)); + // } + +} + + +ibdStruct::~ibdStruct(){ + FREE(ibdScores); + FREE(hbdScores); + if(NULL!=maxErrorArray){ + FREE(maxErrorArray); + } + +} + + + diff --git a/ibd.h b/ibd.h new file mode 100644 index 0000000..67c567b --- /dev/null +++ b/ibd.h @@ -0,0 +1,75 @@ +#ifndef __IBD__ +#define __IBD__ + +#include "dataStructs.h" +#include "io.h" +// #include "mathUtils.h" +#include "shared.h" +#include "paramStruct.h" +#include "vcfReader.h" + +struct paramStruct; + +// void readSites_ibdseq(vcfData *vcfd, paramStruct *pars, ibdStruct* ibd); +void readSites_doIbd(vcfData *vcfd, paramStruct *pars); + +int get_ibdData(const int contig_i, const int site_i, vcfData *vcfd, paramStruct *pars); + +typedef struct ibdStruct { + + int nSites=0; + int nInd=0; + // void add_doseData(const int site_i,const int ind_i, const int dose); + + // doseData[nSites][nInd] + // int** doseData=NULL; + + double* maxErrorArray=NULL; + double* ibdScores = NULL; + double* hbdScores = NULL; + + double **pairScores=NULL; + // double **selfScores=NULL; + + + // ---------- + // // nIndices=6 from ibdseq + // pars->ibdScores = (double**) malloc(6 * sizeof(double*)); + // pars->ibdScores[0] = (double*) malloc(sizeof(double)); + // pars->ibdScores[1] = (double*) malloc(sizeof(double)); + // pars->ibdScores[2] = (double*) malloc(sizeof(double)); + // pars->ibdScores[3] = (double*) malloc(sizeof(double)); + // pars->ibdScores[4] = (double*) malloc(sizeof(double)); + // pars->ibdScores[5] = (double*) malloc(sizeof(double)); + // // ---------- +// + + + double ibdLike(int dose1, int dose2, double err, double fB); + double ibdLike_GL(const int idx, vcfData* vcfd, paramStruct* pars,double fm); + double nullLike(int dose1, int dose2, double fB); + double nullLike_GL(const int idx,vcfData* vcfd, paramStruct* pars,double fm); + double errorRate(double fB); + double* errorArray(double e); + double ibdScore(const int dose1, const int dose2, const double fB); + double ibdScore_GL(const int i1, const int i2,vcfData* vcfd, paramStruct* pars, const double fa, const size_t site_i,double* lngl); + double hbdScore(int dose, double fB); + + ibdStruct(vcfData* vcfd, paramStruct* pars); + // ibdStruct(vcfData* vcfd); + ~ibdStruct(); + +} ibdStruct; + +ibdStruct *ibdStruct_get(paramStruct *pars, vcfData *vcfd); + +// int get_ibdScores(const int contig_i, const int site_i, vcfData *vcfd, paramStruct *pars); +int site_doIbd(const int contig_i, const int site_i, vcfData *vcfd, paramStruct *pars,ibdStruct* ibd); +// int site_doIbd_GL(const int contig_i, const int site_i, vcfData *vcfd, paramStruct *pars,ibdStruct* ibd,double* lngl); +double score(paramStruct* pars, vcfData* vcfd, const int sampleA, const int sampleB, const int marker,const bool isCor); + +int trimmedEnd(paramStruct* pars, const int i1, const int i2, const int start, const int end); +int trimmedStart(paramStruct* pars, const int i1, const int i2, const int start, const int end); +int get_ibd_segments(const char* contigName, paramStruct *pars, int* site2pos); + +#endif // __IBD__ diff --git a/ngsAMOVA.cpp b/ngsAMOVA.cpp index 9e89f31..424dcb9 100755 --- a/ngsAMOVA.cpp +++ b/ngsAMOVA.cpp @@ -16,6 +16,7 @@ #include "paramStruct.h" #include "shared.h" #include "vcfReader.h" +#include "ibd.h" // TODO check size_t using size_t = decltype(sizeof(int)); @@ -23,6 +24,11 @@ using size_t = decltype(sizeof(int)); void input_VCF(paramStruct *pars) { vcfData *vcfd = vcfData_init(pars); + if(0!=args->doIbd){ + pars->ibd=new ibdStruct (vcfd,pars); + readSites_doIbd(vcfd,pars); + return; + } metadataStruct *metadata = NULL; diff --git a/paramStruct.cpp b/paramStruct.cpp index 37d91b8..3b68276 100644 --- a/paramStruct.cpp +++ b/paramStruct.cpp @@ -1,5 +1,6 @@ #include "paramStruct.h" +#include "ibd.h" #include "dataStructs.h" @@ -140,6 +141,14 @@ void paramStruct_destroy(paramStruct *pars) { FFREE(pars->pidx2inds); + if(pars->ibd!=NULL){ + for (size_t i=0;inIndCmb;++i){ + FREE(pars->ibd->pairScores[i]); + } + FREE(pars->ibd->pairScores); + delete pars->ibd; + } + delete pars; } diff --git a/paramStruct.h b/paramStruct.h index 2b2ac0e..a5f61b6 100644 --- a/paramStruct.h +++ b/paramStruct.h @@ -5,6 +5,7 @@ typedef struct paramStruct paramStruct; typedef struct formulaStruct formulaStruct; +typedef struct ibdStruct ibdStruct; typedef struct strArray{ char** vals=NULL; @@ -47,6 +48,10 @@ struct paramStruct { formulaStruct *formula = NULL; + // ------------ + ibdStruct *ibd=NULL; + // ------------ + int nInd; int nIndCmb; diff --git a/shared.h b/shared.h index 46dcd63..c2b1c21 100644 --- a/shared.h +++ b/shared.h @@ -494,7 +494,8 @@ #define METADATA_DELIMS "\t ,\n" // dragon -#define BUF_NSITES 4096 +// #define BUF_NSITES 4096 +#define BUF_NSITES 500000 #define BUF_NCONTIGS 256 #define BUF_NTOTSITES 4096 diff --git a/test/Makefile b/test/Makefile index fd40f75..249bb94 100644 --- a/test/Makefile +++ b/test/Makefile @@ -64,3 +64,18 @@ all: bash -c "diff testwd/test_s9_d1_1K_3gls_mtd1.amova.csv reference/test_s9_d1_1K_mtd1.amova.csv"; @printf "\n\n\n"; # + @printf "\n\n\n"; + @printf "===============================================================================\n"; + @printf "\n\n\n[TEST 1]: Do ibd with ibdseq method implementation using default ibdseq params to ensure we get the same results as ibdseq\n"; + ../ngsAMOVA --in-vcf test1_ibd_100.vcf --issim 1 -doibd 2 > testwd/test1_ibd_100_doIbd2.ibd; + bash -c "diff testwd/test1_ibd_100_doIbd2.ibd reference/test1_ibd_100_doIbd2.ibd"; +# + @printf "\n\n\n"; + @printf "===============================================================================\n"; + @printf "\n\n\n[TEST 2]: Do ibd with both gl and ibdseq gt method implementations using input file where gls are simulated with an error rate of 0. Compare the gl and gt method (with errorprop0) to ensure we get the same results"; + ../ngsAMOVA --in-vcf test2_ibd_1000_err0.vcf --issim 1 -doibd 2 --ibdseq-errorprop 0 > testwd/test2_ibd_1000_doIbd2_errorprop0.ibd + ../ngsAMOVA --in-vcf test2_ibd_1000_err0.vcf --issim 1 -doibd 1 > testwd/test2_ibd_1000_doIbd1.ibd + bash -c "diff testwd/test2_ibd_1000_doIbd1.ibd testwd/test2_ibd_1000_doIbd2_errorprop0.ibd"; + bash -c "diff reference/test2_ibd_1000_doIbd1.ibd testwd/test2_ibd_1000_doIbd1.ibd"; + + diff --git a/test/reference/test1_ibd_100_doIbd2.ibd b/test/reference/test1_ibd_100_doIbd2.ibd new file mode 100644 index 0000000..dc8f992 --- /dev/null +++ b/test/reference/test1_ibd_100_doIbd2.ibd @@ -0,0 +1,15 @@ +3 45 20 139725 217383 6.800202 +5 94 20 74211 217383 9.260095 +14 37 20 61852 217383 3.632247 +14 68 20 61852 217383 3.352406 +14 89 20 61852 66830 3.264416 +29 91 20 61852 217383 3.111089 +37 68 20 61852 217383 3.352406 +37 89 20 61852 66830 3.264416 +50 71 20 61852 217383 16.099328 +63 70 20 65293 217383 3.096635 +68 89 20 61852 66830 3.264416 +69 82 20 86305 200317 3.891425 +69 90 20 86305 200317 3.631788 +82 90 20 61852 217383 3.724463 +89 96 20 86763 217383 18.974930 diff --git a/test/reference/test2_ibd_1000_doIbd1.ibd b/test/reference/test2_ibd_1000_doIbd1.ibd new file mode 100644 index 0000000..fa77be2 --- /dev/null +++ b/test/reference/test2_ibd_1000_doIbd1.ibd @@ -0,0 +1,6 @@ +0 3 20 64828 269464 4.010230 +0 3 20 576583 724837 3.125707 +0 3 20 1332521 1472754 6.797211 +1 2 20 1904955 2101915 3.921097 +1 3 20 1263729 1385075 3.694343 +2 3 20 1601245 1680475 4.841005 diff --git a/test/test1_ibd_100.vcf b/test/test1_ibd_100.vcf new file mode 100644 index 0000000..121d73d --- /dev/null +++ b/test/test1_ibd_100.vcf @@ -0,0 +1,100 @@ +##fileformat=VCFv4.2 +##FILTER= +##source=tskit 0.4.1 +##contig= +##FORMAT= +##bcftools_viewVersion=1.18+htslib-1.18 +##bcftools_viewCommand=view -c2 -C4 -m2 -M2 -v snps --no-update sim_ibd_2307-ibdb_model-ibdb_contig-rep10.vcf; Date=Tue Aug 8 14:59:03 2023 +##fileDate=Tue Aug 8 14:59:04 2023 +##source=vcfgl -err 0.020000 -depth 2.000000 -df (null) -pos0 0 -seed 42 -explode 0 +##source=vcfgl version: v0.1 574913e +##FORMAT= +##FORMAT= +##INFO= +##INFO= +##bcftools_pluginVersion=1.18+htslib-1.18 +##bcftools_pluginCommand=plugin fill-tags -- test1_ibd.vcf -t AF,MAF; Date=Fri Aug 11 13:38:22 2023 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 +20 61852 . 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A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 70640 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf +20 79795 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf +20 82178 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 83658 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 84686 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf +20 85991 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 86160 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 86663 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 88288 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 88812 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 90367 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 92273 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 92352 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 92779 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 97191 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 97667 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 101245 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 101470 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 101962 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 102955 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 103125 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 104589 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 105484 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 106580 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 107132 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 109064 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 110205 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 110397 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 116060 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 116669 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 117079 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 117143 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:79:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 122068 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 122831 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 123145 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 123233 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:84:0,-25.2865,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf,-inf +20 124269 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 124354 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 126713 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 127168 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 128646 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 129980 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:121:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 132496 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 133853 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 133866 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:78:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 135973 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 138501 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:74:0,-22.2762,-inf,-22.2762,-inf,-inf,-22.2762,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 142971 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 143774 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf +20 144231 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf +20 148124 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 149468 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:76:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 151237 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|0:120:0,-36.1236,-inf,-36.1236,-inf,-inf,-36.1236,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 152887 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 155241 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 155835 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 159014 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 160684 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 160796 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 163389 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 167775 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 174145 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:75:0,-22.5772,-inf,-22.5772,-inf,-inf,-22.5772,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 177257 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 178263 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 187348 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 187368 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 192542 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 192888 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 196588 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 203360 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 209275 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:88:-inf,-26.4906,0,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 214488 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:130:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 215395 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|1:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf +20 219060 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 219279 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 221674 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 222135 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 232361 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 242198 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf +20 253462 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf +20 259578 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 269201 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf +20 269464 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 272932 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf +20 281434 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:117:-inf,-35.2205,0,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf +20 282290 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf +20 283247 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf +20 284068 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 0|1:77:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf +20 285339 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 285365 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 285710 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf +20 287721 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 288738 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 290409 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf +20 290793 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:125:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 291313 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 292433 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:121:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 294536 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 294612 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 294852 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:78:0,-23.4803,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 295999 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 0|1:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 301752 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 303255 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 305242 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf +20 315736 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf +20 323522 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 323860 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 329811 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:111:-inf,-33.4143,0,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf +20 331697 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 331830 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 331899 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf +20 332551 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:121:0,-36.4246,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 333165 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 333706 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 333787 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 333981 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:77:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 334513 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 336659 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:114:-inf,-34.3174,0,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 336764 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 337052 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 337808 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:78:-inf,-23.4803,0,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf +20 337863 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 344498 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 349359 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 350749 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 360767 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 362421 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 1|0:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 363530 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf +20 364953 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:76:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 366419 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 369312 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 369633 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 370448 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 370760 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 373195 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 374971 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 399928 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 401061 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:77:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 401722 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf 1|1:84:-inf,-25.2865,0,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 401895 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 403247 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:87:-inf,-26.1896,0,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 405935 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:115:-inf,-34.6185,0,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 408458 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 410227 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf +20 410271 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:81:0,-24.3834,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf,-inf 1|0:121:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 412367 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 415584 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 417943 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 418875 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|1:83:-inf,-24.9855,0,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 419606 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 422328 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|1:81:-inf,-24.3834,0,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 423211 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:74:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 432789 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 433764 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 434339 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|1:115:-inf,-34.6185,0,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf +20 434447 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 436278 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|1:112:-inf,-33.7154,0,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 436828 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 438336 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf +20 439224 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:87:-inf,-26.1896,0,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf 0|0:122:0,-36.7257,-inf,-36.7257,-inf,-inf,-36.7257,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 439333 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 441969 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 443283 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 447741 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 453224 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 453709 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 465583 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf +20 487543 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:82:-inf,-24.6845,0,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:79:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 498840 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:120:-inf,-36.1236,0,-inf,-36.1236,-inf,-inf,-36.1236,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:124:0,-37.3277,-inf,-37.3277,-inf,-inf,-37.3277,-inf,-inf,-inf +20 504477 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:121:0,-36.4246,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf,-inf +20 556405 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:136:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf +20 567906 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 568866 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 569969 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 571951 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|1:117:-inf,-35.2205,0,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf +20 573262 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 575588 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 576583 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 578461 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 583329 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 587922 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 588351 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 591615 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf +20 592234 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 595429 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:124:0,-37.3277,-inf,-37.3277,-inf,-inf,-37.3277,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|1:78:-inf,-23.4803,0,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf +20 599761 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 599785 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 602982 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 603556 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 604145 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 606166 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 610137 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:67:0,-20.169,-inf,-20.169,-inf,-inf,-20.169,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 611435 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:119:-inf,-35.8226,0,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf +20 614704 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 615654 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 615831 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 616431 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 617013 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 618219 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 618457 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 618887 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 619554 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:83:-inf,-24.9855,0,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 620086 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 620719 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 622500 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 623742 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 624872 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 624965 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 629497 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:78:0,-23.4803,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 635766 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 639440 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 640007 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 640168 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 641332 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:79:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 643275 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 645433 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:78:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 660458 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 660568 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 661418 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 661798 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 669990 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 671942 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:76:0,-22.8783,-inf,-22.8783,-inf,-inf,-22.8783,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf +20 673428 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 673766 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 675620 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 676911 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 677612 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 678536 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 679969 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:79:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 680119 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 681526 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 681619 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 683084 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 685902 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 687132 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 687526 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 688007 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 695144 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 699582 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:121:0,-36.4246,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf +20 702150 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 705662 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 709152 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 709578 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 713945 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:125:0,-37.6287,-inf,-37.6287,-inf,-inf,-37.6287,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 717227 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 719070 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 721015 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf +20 724837 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 725657 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 735894 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 737907 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 741776 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 742088 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 744826 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 746521 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 756830 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:122:0,-36.7257,-inf,-36.7257,-inf,-inf,-36.7257,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf +20 757280 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|1:116:-inf,-34.9195,0,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 757428 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf +20 758883 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 759773 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:130:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 762145 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 762429 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 763250 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 768486 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:122:0,-36.7257,-inf,-36.7257,-inf,-inf,-36.7257,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 778709 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 779275 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 779949 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:128:0,-38.5318,-inf,-38.5318,-inf,-inf,-38.5318,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 781202 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 784018 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 784744 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 1|0:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 784833 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 785590 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:84:0,-25.2865,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 789981 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|0:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 791577 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 794650 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 796319 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 797685 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 799561 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 804457 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:126:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 806500 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 815458 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf +20 823654 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 823912 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 828686 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 831773 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 831878 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 837049 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf +20 838740 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf +20 839264 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 0|0:78:0,-23.4803,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf +20 842154 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf +20 842655 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf +20 844540 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:131:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 849734 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|1:83:-inf,-24.9855,0,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf +20 853817 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf +20 855999 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf +20 863202 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 863511 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 864161 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:77:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:72:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf +20 864252 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf +20 868046 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 870194 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:112:-inf,-33.7154,0,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 872360 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 872717 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 883603 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 884492 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 885874 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:116:-inf,-34.9195,0,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf +20 896154 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|0:84:0,-25.2865,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 896170 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:77:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf +20 897339 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:120:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:75:0,-22.5772,-inf,-22.5772,-inf,-inf,-22.5772,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 897957 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 904909 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 932198 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf +20 933822 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 938636 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|1:113:-inf,-34.0164,0,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf 0|0:118:0,-35.5215,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 944569 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 954064 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 955252 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 956916 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:121:0,-36.4246,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf,-inf 0|1:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 956950 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:132:0,-39.736,-inf,-39.736,-inf,-inf,-39.736,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 977632 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:87:-inf,-26.1896,0,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 987524 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 1020348 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 1021382 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf +20 1023804 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:87:-inf,-26.1896,0,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:79:0,-23.7814,-inf,-23.7814,-inf,-inf,-23.7814,-inf,-inf,-inf +20 1024719 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1024732 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf +20 1026099 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1027446 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 1027522 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1027691 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:127:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1030743 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1045770 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf +20 1098952 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|1:112:-inf,-33.7154,0,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 1165297 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf +20 1165502 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:114:-inf,-34.3174,0,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 1170020 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:79:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1170518 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1173231 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1173577 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf +20 1176187 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1179659 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1181155 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1185973 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 1188987 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1189962 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1193934 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1196752 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1203806 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 1206607 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf +20 1207410 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 1209656 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:124:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1211043 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf +20 1211553 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 1214688 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 1216239 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf +20 1217364 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:121:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 1217774 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf +20 1217909 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 1221810 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1224685 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 1226130 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1227161 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 1228250 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf +20 1228673 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1228817 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 1232013 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 1233235 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 1233867 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:77:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 1235074 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 1235328 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf +20 1240391 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf +20 1242945 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 1243117 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1243373 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:124:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 1243724 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf +20 1244459 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1245261 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 1245418 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 1245690 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 1245961 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:122:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf +20 1246224 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1246246 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1247838 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf +20 1263729 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1264163 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:79:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf +20 1265099 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:126:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1265175 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:88:-inf,-26.4906,0,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 1265273 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf +20 1265301 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1265816 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:85:-inf,-25.5875,0,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 1265924 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 1266532 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1266712 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1267144 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:120:-inf,-36.1236,0,-inf,-36.1236,-inf,-inf,-36.1236,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 1268104 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf +20 1268509 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 1268658 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1270108 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf +20 1270164 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf +20 1271061 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:123:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1271208 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf +20 1271279 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 1271356 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf +20 1272241 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf +20 1272467 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf +20 1272591 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1272892 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1272930 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 1273073 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:123:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf +20 1274081 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 1274296 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:127:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1277699 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 1287532 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:77:0,-23.1793,-inf,-23.1793,-inf,-inf,-23.1793,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1288386 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1296324 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 1296544 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|1:81:-inf,-24.3834,0,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf +20 1298805 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 1302092 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:77:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf +20 1305071 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 1307548 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1307792 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1310136 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|1:111:-inf,-33.4143,0,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1310208 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 1310868 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf +20 1312732 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 1|1:111:-inf,-33.4143,0,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 1313634 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|1:119:-inf,-35.8226,0,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 1316578 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:84:0,-25.2865,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 1317615 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf +20 1317665 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf +20 1321276 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:81:0,-24.3834,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf +20 1331265 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|1:85:-inf,-25.5875,0,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf +20 1331358 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 0|1:78:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf +20 1332521 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf +20 1338181 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:74:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1349057 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1349415 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 1352595 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 1355579 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1355710 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1361734 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:120:0,-36.1236,-inf,-36.1236,-inf,-inf,-36.1236,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1365134 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|1:115:-inf,-34.6185,0,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1365482 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf 0|0:121:0,-36.4246,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf,-inf +20 1365606 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1368147 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:113:-inf,-34.0164,0,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:74:0,-22.2762,-inf,-22.2762,-inf,-inf,-22.2762,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1368934 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1371828 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1372416 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1378189 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|1:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1378782 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf +20 1379667 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 1|0:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1381005 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1381148 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:113:-inf,-34.0164,0,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1381149 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1381401 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|1:83:-inf,-24.9855,0,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 1383014 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1383521 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf +20 1383771 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 1|1:86:-inf,-25.8886,0,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 1383951 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 0|0:123:0,-37.0267,-inf,-37.0267,-inf,-inf,-37.0267,-inf,-inf,-inf +20 1384767 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 1384998 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 1385075 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 1385604 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1389540 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|1:88:-inf,-26.4906,0,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1389636 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1393262 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf +20 1393435 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 1|1:86:-inf,-25.8886,0,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf +20 1393882 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1396040 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1397293 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1397868 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 1400725 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1400942 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:133:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:118:0,-35.5215,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1401531 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1401815 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1403235 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1403893 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1404455 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1405991 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1407846 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1407910 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1408158 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 1408985 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|0:124:0,-37.3277,-inf,-37.3277,-inf,-inf,-37.3277,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1412132 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1417249 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1418301 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|0:79:0,-23.7814,-inf,-23.7814,-inf,-inf,-23.7814,-inf,-inf,-inf 1|0:120:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1420374 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1422859 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf +20 1422981 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1424687 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1426029 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 1427211 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1427248 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:112:-inf,-33.7154,0,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf 0|0:75:0,-22.5772,-inf,-22.5772,-inf,-inf,-22.5772,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf +20 1428601 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1429391 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 1429422 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 1|1:116:-inf,-34.9195,0,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1429715 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 1430650 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|1:86:-inf,-25.8886,0,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1434933 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 1435305 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:120:-inf,-36.1236,0,-inf,-36.1236,-inf,-inf,-36.1236,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf +20 1438489 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1440516 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|1:111:-inf,-33.4143,0,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 1443532 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1444553 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|1:113:-inf,-34.0164,0,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 1444902 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf +20 1445410 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:134:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1446391 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1446441 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1448359 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:122:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:118:-inf,-35.5215,0,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1452959 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|1:116:-inf,-34.9195,0,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 1454047 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1454520 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1454578 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1454948 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1456733 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf +20 1457807 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:84:0,-25.2865,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1459511 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf +20 1464009 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1465289 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1465931 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1467663 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1468991 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:127:0,-38.2308,-inf,-38.2308,-inf,-inf,-38.2308,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1470022 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 1470847 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|1:113:-inf,-34.0164,0,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 1472754 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 1475697 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf +20 1477744 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:118:0,-35.5215,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf,-inf +20 1479551 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|0:120:0,-36.1236,-inf,-36.1236,-inf,-inf,-36.1236,-inf,-inf,-inf +20 1486049 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|1:88:-inf,-26.4906,0,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1492414 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1495725 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1497716 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1497883 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 1506008 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 1512249 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 1530697 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 1|0:79:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 1541277 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:77:0,-23.1793,-inf,-23.1793,-inf,-inf,-23.1793,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1545416 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:126:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1549204 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:117:-inf,-35.2205,0,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 1563531 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1564681 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1576688 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:124:0,-37.3277,-inf,-37.3277,-inf,-inf,-37.3277,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1581925 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1581950 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:70:0,-21.0721,-inf,-21.0721,-inf,-inf,-21.0721,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1582079 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1582577 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1582931 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1582984 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1584410 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:121:-inf,-36.4246,0,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1584599 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf 0|1:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1584752 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1584907 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1585169 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1585316 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:82:-inf,-24.6845,0,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1585380 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1585840 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1586222 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1586379 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:113:-inf,-34.0164,0,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf 0|1:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1586824 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1587157 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1587236 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 0|1:121:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1587247 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:119:-inf,-35.8226,0,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1588499 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:82:-inf,-24.6845,0,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1589221 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:115:-inf,-34.6185,0,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf +20 1589643 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1589805 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1590106 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1590204 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1590492 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:123:0,-37.0267,-inf,-37.0267,-inf,-inf,-37.0267,-inf,-inf,-inf +20 1590988 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:81:0,-24.3834,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf,-inf 1|1:123:-inf,-37.0267,0,-inf,-37.0267,-inf,-inf,-37.0267,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1591090 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1591713 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:87:-inf,-26.1896,0,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1592023 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|0:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1592725 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:125:0,-37.6287,-inf,-37.6287,-inf,-inf,-37.6287,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1592903 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1593040 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:114:-inf,-34.3174,0,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1593420 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1593563 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|1:80:-inf,-24.0824,0,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1597225 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1597939 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|0:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1599820 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 1601245 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1601756 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1602399 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 0|0:118:0,-35.5215,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1603934 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1605487 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:126:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:123:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1606630 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:120:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1607113 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1608370 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1614591 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:75:0,-22.5772,-inf,-22.5772,-inf,-inf,-22.5772,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf +20 1617336 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:81:-inf,-24.3834,0,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf 1|1:86:-inf,-25.8886,0,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 1622091 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf +20 1622746 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|1:83:-inf,-24.9855,0,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 1623233 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf +20 1628018 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:88:-inf,-26.4906,0,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 1628563 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf +20 1630137 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:121:-inf,-36.4246,0,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf +20 1635420 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:83:-inf,-24.9855,0,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf 0|0:123:0,-37.0267,-inf,-37.0267,-inf,-inf,-37.0267,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf +20 1636397 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|1:112:-inf,-33.7154,0,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf +20 1644038 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 1644401 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|1:74:-inf,-22.2762,0,-inf,-22.2762,-inf,-inf,-22.2762,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 1646250 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf +20 1651548 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:77:0,-23.1793,-inf,-23.1793,-inf,-inf,-23.1793,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf +20 1652271 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 1652550 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 1|1:114:-inf,-34.3174,0,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf +20 1653229 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:81:0,-24.3834,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 1664385 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 1667638 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|0:118:0,-35.5215,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf,-inf +20 1667878 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf +20 1668175 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:122:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:77:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf +20 1676465 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 1676901 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf +20 1678537 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf +20 1680475 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 1689512 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1696067 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1700167 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1703726 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf +20 1704084 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 1705447 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1705883 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:125:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1706313 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1706735 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1712010 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1715962 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1717814 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf +20 1719919 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:125:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 1722780 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1723020 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 1728949 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:124:0,-37.3277,-inf,-37.3277,-inf,-inf,-37.3277,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 1729004 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:78:0,-23.4803,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1730949 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:79:0,-23.7814,-inf,-23.7814,-inf,-inf,-23.7814,-inf,-inf,-inf 0|1:76:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf +20 1731713 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:113:-inf,-34.0164,0,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:128:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 1732051 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf +20 1733958 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|1:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:116:-inf,-34.9195,0,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf +20 1734995 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf +20 1735073 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:78:0,-23.4803,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1736019 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:113:-inf,-34.0164,0,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf +20 1736283 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:112:-inf,-33.7154,0,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf +20 1736496 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:88:-inf,-26.4906,0,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf +20 1737572 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf +20 1737759 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 1737831 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf +20 1738192 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:79:0,-23.7814,-inf,-23.7814,-inf,-inf,-23.7814,-inf,-inf,-inf +20 1738201 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:86:-inf,-25.8886,0,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 1738399 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf +20 1739678 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 1|0:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 1740380 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf +20 1740447 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:87:-inf,-26.1896,0,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf +20 1740666 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf +20 1741252 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf +20 1741315 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:122:0,-36.7257,-inf,-36.7257,-inf,-inf,-36.7257,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf +20 1741444 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 1|0:121:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:123:0,-37.0267,-inf,-37.0267,-inf,-inf,-37.0267,-inf,-inf,-inf +20 1742249 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1742326 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:122:0,-36.7257,-inf,-36.7257,-inf,-inf,-36.7257,-inf,-inf,-inf +20 1742820 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 1742856 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 1742985 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1743463 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf +20 1744037 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf +20 1745243 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf +20 1745558 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 1746308 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 1747369 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:77:-inf,-23.1793,0,-inf,-23.1793,-inf,-inf,-23.1793,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf +20 1747725 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf +20 1747787 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf +20 1748081 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf +20 1748090 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf +20 1748414 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 1748502 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:79:-inf,-23.7814,0,-inf,-23.7814,-inf,-inf,-23.7814,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 1750767 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:84:-inf,-25.2865,0,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 1750922 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 1750932 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 1751217 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf +20 1752109 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf +20 1753039 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 1|0:120:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf +20 1753064 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:116:-inf,-34.9195,0,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf +20 1753718 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 1754625 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf +20 1755754 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 1756772 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf +20 1756817 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 1795332 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:78:0,-23.4803,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1795629 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1795976 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1804155 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1804556 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf 1|0:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1805111 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1805292 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1812227 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1812849 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 1817431 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1818518 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1820990 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1821105 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1821158 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:74:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1822805 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|1:76:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1823596 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:125:0,-37.6287,-inf,-37.6287,-inf,-inf,-37.6287,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1824139 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1824355 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:117:-inf,-35.2205,0,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1824431 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:86:-inf,-25.8886,0,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:122:0,-36.7257,-inf,-36.7257,-inf,-inf,-36.7257,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1824595 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1829009 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1830265 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1830538 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1832202 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1834259 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:81:0,-24.3834,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1835371 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1845187 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1845571 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1847354 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1848312 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:84:0,-25.2865,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1851234 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1851440 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|1:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1854322 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1855808 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|1:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1857216 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1858803 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1863603 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:74:0,-22.2762,-inf,-22.2762,-inf,-inf,-22.2762,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1869194 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf +20 1897553 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1904955 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 1921295 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 1929948 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf +20 1930874 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:78:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 1931356 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:81:0,-24.3834,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf,-inf +20 1931926 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:78:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf +20 1933108 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 1933159 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:79:0,-23.7814,-inf,-23.7814,-inf,-inf,-23.7814,-inf,-inf,-inf +20 1934497 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf +20 1936147 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 1936799 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 1937781 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:126:0,-37.9298,-inf,-37.9298,-inf,-inf,-37.9298,-inf,-inf,-inf +20 1939909 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:118:0,-35.5215,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf,-inf +20 1940679 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf +20 1940711 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1943007 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 1950853 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1962361 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf +20 1975300 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf +20 1994684 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 1995525 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 1995857 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 2000695 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 2011130 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf +20 2017117 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 2033741 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|1:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 2036280 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:84:0,-25.2865,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf,-inf 0|1:123:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 2036669 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2039678 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2042713 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2043485 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2044777 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2046942 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2047788 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2049590 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2050307 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2050700 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2050706 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:121:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2051136 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:78:0,-23.4803,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf,-inf +20 2051821 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2052753 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2052868 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2053380 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2053482 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2053900 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 2054082 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2054112 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2055807 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2056264 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:123:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2056466 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2057244 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2058839 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2061113 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2061299 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2061695 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:74:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2061702 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2062512 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2063115 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2063933 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:124:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2064017 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2064353 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2064791 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2064879 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2065573 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2066369 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2066892 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2067680 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:121:0,-36.4246,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2067774 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2068007 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2068459 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2069401 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:75:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2070074 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2070452 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2070486 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2071030 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2072183 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2072509 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2073278 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2073853 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2075116 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:118:0,-35.5215,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2080326 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf +20 2081234 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:111:-inf,-33.4143,0,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 2082005 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 2082058 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf +20 2082495 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf +20 2085203 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf +20 2087320 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:122:-inf,-36.7257,0,-inf,-36.7257,-inf,-inf,-36.7257,-inf,-inf +20 2090781 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2091133 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2094117 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 2094193 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf +20 2096053 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2097521 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2098018 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2098696 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2099023 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2101915 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2103033 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2103894 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2104315 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf +20 2105913 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:133:0,-40.037,-inf,-40.037,-inf,-inf,-40.037,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|1:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2106883 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2115461 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf +20 2136419 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2145912 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2148986 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 2149747 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2150932 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:88:-inf,-26.4906,0,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2151748 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:88:-inf,-26.4906,0,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2154938 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2156674 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:109:-inf,-32.8123,0,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 0|1:120:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2156902 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2159503 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2161631 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2163831 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2164250 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2166001 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2167836 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2168722 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:114:-inf,-34.3174,0,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2168768 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2169218 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:80:-inf,-24.0824,0,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2174863 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2174905 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|1:118:-inf,-35.5215,0,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf 1|0:122:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2175133 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2175368 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|1:111:-inf,-33.4143,0,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2176414 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2176699 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2176780 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2178540 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|1:114:-inf,-34.3174,0,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 2181062 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf +20 2182730 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|1:106:-inf,-31.9092,0,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf 0|1:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2183392 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2184764 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2186203 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:117:0,-35.2205,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2188706 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf 0|0:120:0,-36.1236,-inf,-36.1236,-inf,-inf,-36.1236,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2190638 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:118:0,-35.5215,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf,-inf 0|1:120:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2190715 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:108:-inf,-32.5112,0,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2193628 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:98:-inf,-29.5009,0,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:84:0,-25.2865,-inf,-25.2865,-inf,-inf,-25.2865,-inf,-inf,-inf 0|1:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2198550 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:107:-inf,-32.2102,0,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2198801 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2198817 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2199394 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2206025 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:125:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2207800 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|1:84:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2210375 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 2212419 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:88:-inf,-26.4906,0,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf +20 2212696 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 2212749 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 2214042 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 2214332 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 2215392 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:103:-inf,-31.0061,0,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf +20 2215478 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:74:0,-22.2762,-inf,-22.2762,-inf,-inf,-22.2762,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf +20 2216892 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf +20 2220576 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf +20 2224646 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:89:-inf,-26.7917,0,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 2227072 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:117:-inf,-35.2205,0,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 2227237 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:78:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:118:0,-35.5215,-inf,-35.5215,-inf,-inf,-35.5215,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf 0|1:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2230854 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|1:88:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 2232796 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf 0|1:81:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 2233056 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|1:66:-inf,-19.868,0,-inf,-19.868,-inf,-inf,-19.868,-inf,-inf +20 2233532 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf +20 2233545 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:99:0,-29.802,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf,-inf 1|1:104:-inf,-31.3071,0,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf +20 2235100 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 0|0:131:0,-39.4349,-inf,-39.4349,-inf,-inf,-39.4349,-inf,-inf,-inf 1|1:120:-inf,-36.1236,0,-inf,-36.1236,-inf,-inf,-36.1236,-inf,-inf +20 2235470 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf +20 2235677 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf 0|1:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:128:0,-38.5318,-inf,-38.5318,-inf,-inf,-38.5318,-inf,-inf,-inf +20 2235691 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:77:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|0:129:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf +20 2237336 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|1:70:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2240152 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf +20 2240577 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf +20 2243261 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:78:-inf,-23.4803,0,-inf,-23.4803,-inf,-inf,-23.4803,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 2243706 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2244382 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|1:121:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2245669 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:100:-inf,-30.103,0,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 2246421 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2258040 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 2267796 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 2270364 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 2270599 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 2283650 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:89:0,-26.7917,-inf,-26.7917,-inf,-inf,-26.7917,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 2284953 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|0:86:0,-25.8886,-inf,-25.8886,-inf,-inf,-25.8886,-inf,-inf,-inf +20 2292756 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2294009 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2306366 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2310462 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|1:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2311430 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:78:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf +20 2315826 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|1:87:-inf,-26.1896,0,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 2317796 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf 1|1:90:-inf,-27.0927,0,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf +20 2321136 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:115:-inf,-34.6185,0,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 2322938 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 1|1:120:-inf,-36.1236,0,-inf,-36.1236,-inf,-inf,-36.1236,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 2326603 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2331796 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2333920 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 2334107 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2334205 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 2334435 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:72:0,-21.6742,-inf,-21.6742,-inf,-inf,-21.6742,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2334479 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 2334742 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 2334865 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 2336165 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2336439 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:75:0,-22.5772,-inf,-22.5772,-inf,-inf,-22.5772,-inf,-inf,-inf 0|0:109:0,-32.8123,-inf,-32.8123,-inf,-inf,-32.8123,-inf,-inf,-inf +20 2337700 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 2338046 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 1|0:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2338122 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 0|0:83:0,-24.9855,-inf,-24.9855,-inf,-inf,-24.9855,-inf,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2341862 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf +20 2344690 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 2348700 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 2349978 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 2352495 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf 1|0:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2352820 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:80:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2353351 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:107:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2366239 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2367758 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:119:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:94:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2368279 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:85:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2368916 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2369186 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:108:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2369744 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:104:0,-31.3071,-inf,-31.3071,-inf,-inf,-31.3071,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2369867 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2371769 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:106:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:79:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2372456 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|1:120:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:89:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2372495 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:116:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:100:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2376597 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf 1|0:112:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf +20 2377679 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|1:81:-inf,-24.3834,0,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf 0|1:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:86:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2379285 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:82:0,-24.6845,-inf,-24.6845,-inf,-inf,-24.6845,-inf,-inf,-inf 1|1:96:-inf,-28.8989,0,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf 0|1:109:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:113:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2379664 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:113:-inf,-34.0164,0,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2379780 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:102:-inf,-30.7051,0,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2381095 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 0|0:80:0,-24.0824,-inf,-24.0824,-inf,-inf,-24.0824,-inf,-inf,-inf 1|1:97:-inf,-29.1999,0,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2382433 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:95:-inf,-28.5978,0,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2387318 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:118:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2444280 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:105:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2454215 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:83:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2456869 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf +20 2470174 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|0:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 2473964 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:101:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:79:0,-23.7814,-inf,-23.7814,-inf,-inf,-23.7814,-inf,-inf,-inf +20 2474487 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 2474718 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:110:0,-33.1133,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:96:0,-28.8989,-inf,-28.8989,-inf,-inf,-28.8989,-inf,-inf,-inf +20 2474771 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|0:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:114:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:88:0,-26.4906,-inf,-26.4906,-inf,-inf,-26.4906,-inf,-inf,-inf 1|1:94:-inf,-28.2968,0,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf +20 2474857 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 2474928 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf 1|0:87:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf +20 2474941 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:121:0,-36.4246,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf,-inf 1|0:93:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:115:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf +20 2475832 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf +20 2480158 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:99:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:111:0,-33.4143,-inf,-33.4143,-inf,-inf,-33.4143,-inf,-inf,-inf 1|0:78:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf +20 2481370 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:103:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf +20 2483763 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|0:90:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:82:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf +20 2485075 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:96:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf 1|0:104:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:94:0,-28.2968,-inf,-28.2968,-inf,-inf,-28.2968,-inf,-inf,-inf +20 2488183 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:98:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 1|0:97:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 2488917 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|1:91:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|0:117:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:108:0,-32.5112,-inf,-32.5112,-inf,-inf,-32.5112,-inf,-inf,-inf +20 2497174 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|0:111:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:122:0,-36.7257,-inf,-36.7257,-inf,-inf,-36.7257,-inf,-inf,-inf +20 2499601 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|1:95:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|1:92:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|0:102:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf +20 2503369 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf 0|0:112:0,-33.7154,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf,-inf 1|1:93:-inf,-27.9958,0,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf 0|0:114:0,-34.3174,-inf,-34.3174,-inf,-inf,-34.3174,-inf,-inf,-inf +20 2505008 . A C,G,T . PASS MAF=0.375;AF=0.375,0,0 GT:DP:GL 0|0:102:0,-30.7051,-inf,-30.7051,-inf,-inf,-30.7051,-inf,-inf,-inf 1|0:110:-inf,0,-inf,-inf,-inf,-inf,-inf,-inf,-inf,-inf 1|1:105:-inf,-31.6082,0,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf +20 2511956 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:123:0,-37.0267,-inf,-37.0267,-inf,-inf,-37.0267,-inf,-inf,-inf 1|1:91:-inf,-27.3937,0,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf +20 2522431 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:121:0,-36.4246,-inf,-36.4246,-inf,-inf,-36.4246,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|1:112:-inf,-33.7154,0,-inf,-33.7154,-inf,-inf,-33.7154,-inf,-inf 0|0:92:0,-27.6948,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf,-inf +20 2522825 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 0|0:95:0,-28.5978,-inf,-28.5978,-inf,-inf,-28.5978,-inf,-inf,-inf 1|1:81:-inf,-24.3834,0,-inf,-24.3834,-inf,-inf,-24.3834,-inf,-inf 0|0:90:0,-27.0927,-inf,-27.0927,-inf,-inf,-27.0927,-inf,-inf,-inf +20 2523471 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:119:0,-35.8226,-inf,-35.8226,-inf,-inf,-35.8226,-inf,-inf,-inf 0|0:106:0,-31.9092,-inf,-31.9092,-inf,-inf,-31.9092,-inf,-inf,-inf 1|1:110:-inf,-33.1133,0,-inf,-33.1133,-inf,-inf,-33.1133,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf +20 2523937 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:113:0,-34.0164,-inf,-34.0164,-inf,-inf,-34.0164,-inf,-inf,-inf 0|0:85:0,-25.5875,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf,-inf 1|1:99:-inf,-29.802,0,-inf,-29.802,-inf,-inf,-29.802,-inf,-inf 0|0:87:0,-26.1896,-inf,-26.1896,-inf,-inf,-26.1896,-inf,-inf,-inf +20 2526265 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 0|0:100:0,-30.103,-inf,-30.103,-inf,-inf,-30.103,-inf,-inf,-inf 1|1:117:-inf,-35.2205,0,-inf,-35.2205,-inf,-inf,-35.2205,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf +20 2526815 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:116:0,-34.9195,-inf,-34.9195,-inf,-inf,-34.9195,-inf,-inf,-inf 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:91:0,-27.3937,-inf,-27.3937,-inf,-inf,-27.3937,-inf,-inf,-inf 1|1:85:-inf,-25.5875,0,-inf,-25.5875,-inf,-inf,-25.5875,-inf,-inf +20 2526852 . A C,G,T . PASS MAF=0.5;AF=0.5,0,0 GT:DP:GL 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf 1|1:124:-inf,-37.3277,0,-inf,-37.3277,-inf,-inf,-37.3277,-inf,-inf 0|0:115:0,-34.6185,-inf,-34.6185,-inf,-inf,-34.6185,-inf,-inf,-inf 0|0:103:0,-31.0061,-inf,-31.0061,-inf,-inf,-31.0061,-inf,-inf,-inf +20 2526888 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:101:0,-30.404,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf,-inf 0|0:97:0,-29.1999,-inf,-29.1999,-inf,-inf,-29.1999,-inf,-inf,-inf 0|0:98:0,-29.5009,-inf,-29.5009,-inf,-inf,-29.5009,-inf,-inf,-inf 1|1:101:-inf,-30.404,0,-inf,-30.404,-inf,-inf,-30.404,-inf,-inf +20 2527951 . A C,G,T . PASS MAF=0.25;AF=0.25,0,0 GT:DP:GL 0|0:93:0,-27.9958,-inf,-27.9958,-inf,-inf,-27.9958,-inf,-inf,-inf 0|0:107:0,-32.2102,-inf,-32.2102,-inf,-inf,-32.2102,-inf,-inf,-inf 0|0:105:0,-31.6082,-inf,-31.6082,-inf,-inf,-31.6082,-inf,-inf,-inf 1|1:92:-inf,-27.6948,0,-inf,-27.6948,-inf,-inf,-27.6948,-inf,-inf diff --git a/vcfReader.cpp b/vcfReader.cpp index 501d6f8..7d04ca0 100644 --- a/vcfReader.cpp +++ b/vcfReader.cpp @@ -599,9 +599,17 @@ vcfData *vcfData_init(paramStruct *pars) { // GT vcfd->nGT = 3; vcfd->nJointClasses = 9; - } else { - NEVER; - } + } else if(1==args->doIbd){ + // using 3 GL values + vcfd->nGT = 3; + vcfd->nJointClasses = 9; + }else if (2==args->doIbd){ + // GT + vcfd->nGT = 3; + vcfd->nJointClasses = 9; + }else{ + NEVER; + } if (1 == args->doDist) { diff --git a/vcfReader.h b/vcfReader.h index 7fd5aaf..daf71fb 100644 --- a/vcfReader.h +++ b/vcfReader.h @@ -273,7 +273,7 @@ struct get_data { } ~get_data() { - FREE(data); + FFREE(data); } }; @@ -290,4 +290,7 @@ int get_JointGenotypeMatrix_GT(const int contig_i, const int site_i, vcfData *vc int GLtoGT_1_JointGenotypeMatrix(vcfData *vcf, paramStruct *pars); + +int read_site_with_alleles(const int contig_i, const int site_i, vcfData *vcfd, paramStruct *pars, int *a1, int *a2); + #endif // __VCF_READER__ From 45b46aa23e71a77de6e2397d963e1112b52a9ffb Mon Sep 17 00:00:00 2001 From: Isin Altinkaya Date: Mon, 21 Aug 2023 21:00:19 +0200 Subject: [PATCH 2/2] [fix] Remove redundant readsite directive in gl --- ibd.cpp | 32 ++++---------------------------- 1 file changed, 4 insertions(+), 28 deletions(-) diff --git a/ibd.cpp b/ibd.cpp index 8d04967..9d545bb 100644 --- a/ibd.cpp +++ b/ibd.cpp @@ -153,13 +153,10 @@ void readSites_doIbd(vcfData *vcfd, paramStruct *pars){ /// ------------------- if(args->doIbd==1){ - // TODO XX - // glData lgls(vcfd); bool ind_is_missing[nInd]={false}; do { - int ret=read_site_with_alleles(contig_i,site_i,vcfd,pars,a1,a2); //TODO assume only 3 gls for now // int a1a1 = bcf_alleles_get_gtidx(*a1, *a1);D @@ -169,9 +166,6 @@ void readSites_doIbd(vcfData *vcfd, paramStruct *pars){ int a1a2=1; int a2a2=2; - // if(site_i==0){ - // fprintf(stdout, "X,%d,%d,%d\n",a1a1,a1a2,a2a2); - // } for (int indi = 0; indi < nInd; indi++) { if (1 == lgls.ind_data_isMissing(indi)) { @@ -226,18 +220,11 @@ void readSites_doIbd(vcfData *vcfd, paramStruct *pars){ } } - // fprintf(stdout, "VGL1,%d,%d,%d,%f\n",i1,i2,site_i,score); - // if(i1==0 && i2==1){ - // fprintf(stdout, "VGL1,%d,%d,%d,%f\n",i1,i2,site_i,score); - // } - int pair_idx=nCk_idx(nInd,i1,i2); pars->ibd->pairScores[pair_idx][site_i]=score; // VALIDATION GL1 - - // if(i1==0 && i2==1 && site_i==0){ // fprintf(stdout, "VGL1,%d,%d,%d,%f\n",i1,i2,site_i,score); - // } + // fprintf(stdout, "VGL1,%d,%d,%d,%f\n",i1,i2,vcfd->rec->pos+1,score); } @@ -245,14 +232,11 @@ void readSites_doIbd(vcfData *vcfd, paramStruct *pars){ } while (0); - // TODO XX }else if (args->doIbd==2){ - // TODO XX - // @@ -378,13 +362,9 @@ void readSites_doIbd(vcfData *vcfd, paramStruct *pars){ int pair_idx=nCk_idx(nInd,i1,i2); pars->ibd->pairScores[pair_idx][site_i]=score; // VALIDATION1 - // dose1,dose2,i1,i2,site,score - // fprintf(stdout, "V1,%d,%d,%d,%d,%d,%f\n",dose1,dose2,i1,i2,site_i,score); // VALIDATION GT1 - // if(i1==0 && i2==1){ // fprintf(stdout, "VGT1,%d,%d,%d,%f\n",i1,i2,site_i,score); - // } - // NEVER; + // fprintf(stdout, "VGT1,%d,%d,%d,%f\n",i1,i2,vcfd->rec->pos+1,score); } } @@ -394,8 +374,7 @@ void readSites_doIbd(vcfData *vcfd, paramStruct *pars){ } } while (0); - // - // TODO XX + }else{ NEVER; } @@ -822,16 +801,13 @@ double ibdStruct::ibdScore_GL(const int i1, const int i2, vcfData* vcfd, paramSt GLS[7]=exp(i1gl2+i2gl3); GLS[8]=exp(i1gl3+i2gl3); - // if(i1==0 && i2==1 && site_i==0){ -// fprintf(stderr,"site:%ld i1:%d i2:%d i1gl1:%f i1gl2:%f i1gl3:%f i2gl1:%f i2gl2:%f i2gl3:%f\n",site_i,i1,i2,i1gl1,i1gl2,i1gl3,i2gl1,i2gl1,i1gl3); - // } double m=0.0; double n=0.0; for(int i=0;i<9;++i){ if(GLS[i]!=0.0){ -// fprintf(stderr,"site:%ld i1:%d i2:%d i1gl1:%f i1gl2:%f i1gl3:%f i2gl1:%f i2gl2:%f i2gl3:%f\n",site_i,i1,i2,i1gl1,i1gl2,i1gl3,i2gl1,i2gl1,i1gl3); +// fprintf(stderr,"%ld i1:%d i2:%d i1gl1:%f i1gl2:%f i1gl3:%f i2gl1:%f i2gl2:%f i2gl3:%f\n",site_i,i1,i2,i1gl1,i1gl2,i1gl3,i2gl1,i2gl1,i1gl3); m+=GLS[i]*ibdLike_GL(i,vcfd,pars,fa); n+=GLS[i]*nullLike_GL(i,vcfd,pars,fa);