Visium-Clustergrammer2 Data 10X Visium Dataset The 10X Visium data was obtained from from 10x Genomics. The data was not included in this repo because of GitHub size limitations but can be easily obtained from 10x Genomics Datasets. Reference Dataset Similarly to the Seurat spatial vignette we used a single cell RNA-seq dataset (~14,000 Mouse cortical cells produced by the Allen Institute) as a reference dataset for labeling the Visium data. References This project was influenced by the Seurat spatial vignette from the Satija lab and we are very grateful for thier public examples. MyBinder link Contributors Nicolas Fernandez Assaf Magen Adeeb Rahman Manuel Garcia-Quismondo Tutorial Video Contact and Feedback Please contact us through the Gitter Discussion Board or issue tracker with questions comments or concerns.