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1. cytoscape/cytoscape.js

   Graph theory / network library for analysis and visualisation (supports CommonJS/Node.js/Browserify/Webpack, AMD/Require.js, npm, CDNJS, Bower, jspm, Meteor, jQuery, and plain JS/JavaScript)

   JavaScript 3.3k 496

2. cBioPortal/cbioportal

   cBioPortal for Cancer Genomics

   JavaScript 125 151

3. iVis-at-Bilkent/sbgnviz.js

   A web based visualization tool for process description maps in SBGN

   JavaScript 17 7

4. BioPAX/Paxtools

   The BioPAX Object Model, API and utilities implemented in Java

   Web Ontology Language 6 4

5. iVis-at-Bilkent/chise.js

   A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

   JavaScript 2 1

6. iVis-at-Bilkent/pathway-mapper

   An interactive and collaborative graphical curation tool for cancer pathways

   JavaScript 7 7