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Open-source initiative for a system for medical image processing.
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README.md

Imagens Médicas 2 (Medical Images 2)

Open-source initiative for a system for medical image processing.

Build Status GitHub issues License

Online Version (Under Development)

Follow the link: IM2 WebApp

Summary

The project IM2_app is an initiative to create an open source medical imaging system.

Obs:

The first IM2_app app was developed in MATLAB, this generates contradictions regarding the open-source initiative, however the program must run with all its functionality in Octave.

There is also a version developed in python, whose app has almost all the features of the MATLAB version, and a few more (eg count the number of colonies).

A Third version, as a web application is under development and will be released no later than September.

Instalations

  • MATLAB version: IM2_app is in its version 1.1.0. Run Apps/mIM2_app to use the interface app or toolbox/matlab to see its image processing functions.
  • Python version: Run python im2_app.py, located in the folder Apps/pyIM2_app.
  • Web version: Visit our web page after the release of this version.

Contribute

If you want to contribute to the project, all help is welcome. Contributing is also a way to learn more about social coding, bug reports, development tips, pull requests...

In this repository

  • docs: Images, guides, references, consulted codes.
  • Apps: App Interface Codes.
    • Apps/mIM2_app: GUI developed with MATLAB .
    • Apps/pyIM2_app: GUI developed with Python (PyQT).
  • Aulas: Classes and practical work of the discipline. Codes in python and matlab.
  • datasets: Images used in classes and some sample images for app testing.
  • toolbox:
    • matlab: IM2_app image processing matlab functions and tools.
    • python: IM2_app image processing python functions. (scipy, scikit-image e open-cv)
  • im2webapp: Web Application source code.

Configuring the development environment

Desktop Version

  • Python3 with the following modules installed: pip install -r requirements.txt
  • Matlab or Octave (Open-Source Alternative).

WebApp

More Info

License

This project is licensed under the MIT License - see the LICENSE.md file for details.

Autores

See also the list of contributors who participated in this project.

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