This might be already be reported but here is some code related to the problem.
Cyberduck quits crashing abruptly when syncing large folders.
(more than 50 to a 100 items)
2007-01-25 21:30:58.284 Cyberduck jobjc_mapObjects() collision, objc object 316d60 of type (NSPlaceholderArray) being entered for Java object of class (com/apple/cocoa/foundation/NSArray) in entry 1ac40110
2007-01-25 21:30:58.284 Cyberduck existing java object's class is (com/apple/cocoa/foundation/NSArray)
2007-01-25 21:30:58.285 Cyberduck no corresponding java entry! (did it get collected?)
jobjc_mapObjects(): mapping inconsistency -- hashtable entries are not identical
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