When editing a php file in cyberduck with sublime on mac, and then saving it does not always reflect on the server. 50% of the time you have to open the file a second time to get the file update to show on the server. This is using a lightsail ubuntu AWS server.
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Can you please try if still see this issue with the current snapshot build
by updating from within Cyberduck in ''Preferences → Update →
Automatically check for updates in → Snapshot Builds''.
This still happens in the snapshot. Big Sur, Sublime, Edit PHP file and press SAVE or close Sublime does not always upload the change to the server. No message that the file did not get updated. Not consistent