Just renamed two folders then tried to download them. In the FTP window all I see are dupes of folders (see attached). When I download, Cyberduck just keeps creating endless subfolders without content and then says "Transfer Incomplete."
As you can see in attached screenshot, folder can be viewed in File Manager by logging into cPanel.
This is also related. Lots of times Cyberduck refuses to delete folders. Says there is content in the folders (of course there is content). However, if I use File Manager, I can easily delete the folder and subfolder and contents.