npm with deps from git are kind of a pain.
The trick is to remove the package from the lock file and the node_modules... which is also annoying.
npm uninstall is not fast and this package automated this for you leaving you to run npm i with whichever options you need...
Add this to your scripts after installing:
"npm-update-git-deps": "npm-update-git-deps",
Then just run it... it checks each dependency and devDependency against the isGit util to decide if it should be removed.
After it is done, usually about 700-900milliseconds, you can enjoy waiting for npm to reinstall them.
TIP: You can speed up npm i ever so slightly with the following (assuming you are installing from git it is safe to add these flags)
npm i --force --no-audit --no-fund