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Remove -XX:+TieredCompilation -XX:+AggressiveOpts from *run.sh scripts

since it has been added to env.sh JAVA_OPTS for all JVM programs.
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1 parent 6d778a6 commit 759e99a4e06f52cc9491f583b5eb8ff8136006d9 @jafingerhut committed Feb 21, 2013
Showing with 15 additions and 6 deletions.
  1. +1 −1 fastaredux/clj-run.sh
  2. +1 −1 fastaredux/java-run.sh
  3. +1 −1 knucleotide/clj-run.sh
  4. +1 −1 knucleotide/java-run.sh
  5. +9 −0 revcomp/README
  6. +1 −1 revcomp/clj-run.sh
  7. +1 −1 revcomp/java-run.sh
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@@ -18,4 +18,4 @@ shift
# much.
MAX_HEAP_MB=16
-../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -XX:+TieredCompilation -XX:+AggressiveOpts -Xmx${MAX_HEAP_MB}m -classpath "${PS_FULL_CLJ_CLASSPATH}" fastaredux "$@"
+../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -Xmx${MAX_HEAP_MB}m -classpath "${PS_FULL_CLJ_CLASSPATH}" fastaredux "$@"
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@@ -11,4 +11,4 @@ source ../env.sh
OUTP="$1"
shift
-../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -XX:+TieredCompilation -XX:+AggressiveOpts -classpath "${JAVA_OBJ_DIR}" fastaredux "$@"
+../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -classpath "${JAVA_OBJ_DIR}" fastaredux "$@"
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@@ -23,4 +23,4 @@ shift
# much.
MAX_HEAP_MB=1024
-../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --input "${INP}" --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -XX:+TieredCompilation -XX:+AggressiveOpts -Xmx${MAX_HEAP_MB}m -classpath "${PS_FULL_CLJ_CLASSPATH}" knucleotide "$@"
+../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --input "${INP}" --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -Xmx${MAX_HEAP_MB}m -classpath "${PS_FULL_CLJ_CLASSPATH}" knucleotide "$@"
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@@ -13,4 +13,4 @@ shift
OUTP="$1"
shift
-../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --input "${INP}" --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -XX:+TieredCompilation -XX:+AggressiveOpts -Xmx1024m -classpath "${JAVA_OBJ_DIR}" knucleotide "$@"
+../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --input "${INP}" --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -Xmx1024m -classpath "${JAVA_OBJ_DIR}" knucleotide "$@"
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@@ -1,3 +1,12 @@
+----------------------------------------------------------------------
+On Feb 21 2013 the fastest Java and Clojure versions on the Alioth web
+site were:
+
+64-bit 4 core
+revcomp.clojure = my revcomp.clj-15.clj except for one comment line
+revcomp.java-3.java = my revcomp.java-3.java except for one comment line
+
+----------------------------------------------------------------------
As of May 28, 2012, the fastest Java and Clojure versions on the
Alioth web site were:
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@@ -23,4 +23,4 @@ shift
# much.
MAX_HEAP_MB=384
-../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --input "${INP}" --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -XX:+TieredCompilation -XX:+AggressiveOpts -Xmx${MAX_HEAP_MB}m -classpath "${PS_FULL_CLJ_CLASSPATH}" revcomp "$@"
+../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --input "${INP}" --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -Xmx${MAX_HEAP_MB}m -classpath "${PS_FULL_CLJ_CLASSPATH}" revcomp "$@"
View
@@ -13,4 +13,4 @@ shift
OUTP="$1"
shift
-../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --input "${INP}" --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -XX:+TieredCompilation -XX:+AggressiveOpts -classpath "${JAVA_OBJ_DIR}" revcomp "$@"
+../bin/measureproc ${MP_COMMON_ARGS} ${MP_ARGS_FOR_JVM_RUN} --input "${INP}" --output "${OUTP}" "${JAVA}" ${JAVA_PROFILING} ${JAVA_OPTS} -classpath "${JAVA_OBJ_DIR}" revcomp "$@"

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