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Use PMCOA_CUSTOM for test project instead of specific file on FTP

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jakelever committed Nov 6, 2018
1 parent 315184f commit fe65114f310c1cf8f49afce47a90dce4b2daea1e
Showing with 9 additions and 8 deletions.
  1. +9 −8 examples/TextMiningCounter/pubrunner.yml
@@ -3,20 +3,21 @@ version: 0.1
url: https://github.com/jakelever/pubrunner/tree/master/examples/TextMiningCounter
resources:
full:
# - PUBMED:
# format: txt
- PUBMED:
format: txt
- PMCOA:
format: txt
test:
# - PUBMED_CUSTOM:
# pmids: 29590681
# format: txt
# rename: PUBMED
- PMCOA_TESTFILE:
- PUBMED_CUSTOM:
pmids: 29590681
format: txt
rename: PUBMED
- PMCOA_CUSTOM:
pmcids: 5776432
format: txt
rename: PMCOA
run:
# - python Count.py --inFile {IN:PUBMED/%} --outFile {OUT:counts/%.txt}
- python Count.py --inFile {IN:PUBMED/%} --outFile {OUT:counts/%.txt}
- python Count.py --inFile {IN:PMCOA/%} --outFile {OUT:counts/%.txt}
- python Sum.py --inDir {IN:counts} --outFile {OUT:textminingcount.txt}
output: textminingcount.txt

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