circtools 2.0.4 released

What's Changed

• Fix for #58 by @wjmellon in #59
• New nano by @wjmellon in #57
• Primex and Circtest Fixes. Docker fix by @wjmellon in #60
• remove rerun if failed by @wjmellon in #61
• primer retry 2 hours by @wjmellon in #63
• retry bug by @wjmellon in #64
• nanopore install mac fix by @wjmellon in #65
• Table of Contents + MacOS Installation Notes ReadTheDocs by @wjmellon in #66
• Param File Fix Sirna by @wjmellon in #68
• Primer CSV/excel Output, Primer Test, nanopore retry by @wjmellon in #67
• Pwd command for install R by @wjmellon in #69
• primer docker fix by @wjmellon in #70
• try different workflow detection for primer by @wjmellon in #72
• Check for tag then default to nightly by @wjmellon in #73
• Add Arg @ Detection for Argparse and Conservation Mafft fix by @wjmellon in #74
• Mac OS Runner Upgrades by @wjmellon in #75
• Versions and Macos Call by @wjmellon in #78

Full Changelog: v2.0.3...v2.0.4

v2.0.3

We are proud to release a new maintenance version of circtools, 2.0.3:

What's Changed

• hot fix for nanopore module reference download from Genome Browser -> @tjakobi #56
• conservation output -> pdf by @wjmellon in #48
• failsafe for misconfigured runners by @wjmellon in #50
• remove ubuntu line + delete wget install by @wjmellon in #52
• delete unnecessary installs and check ensembl by @wjmellon in #53

Full Changelog: v2.0.2...v2.0.3

v2.0.2

We are proud to release a new maintenance version of circtools, 2.0.2:

What's Changed

• Conservation module with intronic circle check by @shubhada-kulkarni in #31
• Commented the local blast running part by @shubhada-kulkarni in #34
• OpenSSL Primex Fix by @wjmellon in #41
• Add circtools example data for CI by @wjmellon in #43
• Docker Setup Files by @wjmellon in #37
• Pip tests by @wjmellon in #46
• Docker Tests by @wjmellon in #47

Full Changelog: v2.0.1...v2.0.2

circtools 2.0 released

We are proud to release a new major version of circtools, 2.0 that include 4 new modules!

• conservation module: enables users to perform circRNA conservation analysis in five widely studied animal model species: mouse, human, rat, pig, and dog.
• padlock probe design: a specialized primer design tool tailored specifically for next-generation spatial transcriptomics technology.
• nanopore module: requires sequencing reads that have been produced using the protocol outlined in Rahimi et al. (2021) and enables full-length circRNA detection.
• metatool module: offers integration of circularRNA predictions from CIRIquant to boost recall rates for circRNA detection.

circtools 1.3.1 released

We are proud to release a new maintenance version of circtools, 1.3.1 as of today.

Fixes

• Fixed an issue with the R dependency installation script that used an outdated Microsoft CRAN mirror and thus would fail to install all packages (#2 )

circtools 1.3.0 released

v1.3.0

Version 1.3.0 release