Analyzing competitive interaction data
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DESCRIPTION
NAMESPACE
README.md
compete.Rproj
cran-comments.md

README.md

compete

Analyzing head-to-head competitive interaction data


Author: James P. Curley,

Contributions: Jiayi Fu, Ke Shen & Ziheng Huang

Maintainer: James P. Curley

email: jc3181 AT columbia DOT edu


Installation
devtools::install_github('jalapic/compete')
Citation

Even though this package is in development, if you do use it in published research please cite it as:

Curley, J.P. 2016, compete: Analyzing Social Hierarchies: R package version 0.1


Functions

  • get_wl_matrix - turns edgelist into Win-Loss Sociomatrix

  • get_di_matrix - turns Win-Loss Sociomatrix into Binary Win-Loss Sociomatrix

  • org_matrix - organize Sociomatrix

  • dci - Directional Consistency of Sociomatrix

  • phi - Phi Skew-Symmetry Coefficient of Sociomatrix

  • dc_test - Randomization Test of Directional Consistency and Phi Skew-Symmetry

  • devries - Modified Landau's h' of Sociomatrix and randomization test

  • ttri - Triangle Transitivity of Sociomatrix

  • ttri_test - Randomization Test of Triangle Transitivity of Sociomatrix

  • isi98 - I&SI ranking of Sociomatrix (see documentation)

  • isi13 - I&SI ranking of Sociomatrix using updated algorithm (see documentation)

  • ds - get David's Scores of Sociomatrix


Published papers

This package was used in the following papers:

Pineda-Galindo E, Cedra-Molina AL, Mayagoitia-Novales L, Matamoros-Trejo G, de la O C, 2017, Biological Validataions of Fecal Glucocorticoid, Testosterone, and Progesterone Metabolite Measurements in Captive Stumptail Macaques (Macaca arctoides), Int J Primatol DOIL 10.1007/s10764-017-9992-7

See publication list of Curley Lab here for some examples.

So, N. et al. 2015, A Social Network Approach Reveals Associations between Mouse Social Dominance and Brain Gene Expression, PLOS ONE

Curley JP, 2016, Temporal Pairwise-Correlation Analysis Provides Empirical Support for Attention Hierarchies in Mice, Biology Letters

Williamson C, Lee W & Curley JP, 2016, Temporal Dynamics of Social Hierarchy Formation and Maintenance in Male Mice., Animal Behaviour.

Williamson CM, Franks B & Curley JP, 2016, Mouse Social Network Dynamics and Community Structure are Associated with Brain Plasticity-Related Gene Expression, Frontiers in Behavioral Neuroscience 10:152.

Arseneau-Robara TJM et al., 2017, Intra- and interindividual differences in the costs and benefits of intergroup aggression in female vervet monkeys, Animal Behaviour 123:129–137.

Williamson CM, Romeo RD & Curley JP, 2017, Dynamic changes in social dominance and mPOA GnRH expression in male mice following social opportunity, Hormones & Behavior 87:80-88.

Williamson CM, Lee W, Romeo RD & Curley JP, 2017, Social context-dependent relationships between mouse dominance rank and plasma hormone levels. Physiology & Behavior.