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##fileformat=VCFv4.1
##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
##FORMAT=<ID=GLE,Number=1,Type=String,Description="Genotype Likelihood Explicit, same as GL, but with tags to indicate the specific genotype. For instance, 0^-75.22|1^-223.42|0/0^-323.03|1/0^-99.29|1/1^-802.53 represents both haploid and diploid genotype likilehoods in a biallelic context">
##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observations">
##INFO=<ID=BVAR,Number=0,Type=Flag,Description="The best genotype combination in the posterior is variant (non homozygous).">
##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing. Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
##INFO=<ID=CpG,Number=0,Type=Flag,Description="CpG site (either CpG, TpG or CpA)">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio. Ratio between depth in samples with each called alternate allele and those without.">
##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=HWE,Number=1,Type=Float,Description="Phred-scaled discrete HWE prior probability of the genotyping across all samples.">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
##INFO=<ID=REPEAT,Number=1,Type=String,Description="Description of the local repeat structures flanking the current position">
##INFO=<ID=RO,Number=1,Type=Integer,Description="Reference allele observations">
##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
##INFO=<ID=XAI,Number=A,Type=Float,Description="Alternate allele read INDEL rate: The rate of INDELs (gaps) in reads supporting the alternate allele, excluding the called variant.">
##INFO=<ID=XAM,Number=A,Type=Float,Description="Alternate allele read mismatch rate: The rate of SNPs + MNPs + INDELs in reads supporting the alternate allele, excluding the called variant.">
##INFO=<ID=XAS,Number=A,Type=Float,Description="Alternate allele read SNP rate: The rate of per-base mismatches (SNPs + MNPs) in reads supporting the alternate allele, excluding the called variant.">
##INFO=<ID=XRI,Number=1,Type=Float,Description="Reference allele read INDEL rate: The rate of INDELs (gaps) in reads supporting the reference allele.">
##INFO=<ID=XRM,Number=1,Type=Float,Description="Reference allele read mismatch rate: The rate of SNPs + MNPs + INDELs in reads supporting the reference allele.">
##INFO=<ID=XRS,Number=1,Type=Float,Description="Reference allele read SNP rate: The rate of per-base mismatches (SNPs + MNPs) in reads supporting the reference allele.">
##VariantAnnotator="analysis_type=VariantAnnotator input_file=[] sample_metadata=[] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=null excludeIntervals=null reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[/data/reference/dbSNP_132/dbsnp_132.hg19.vcf, freebayes.vcf.raw] rodToIntervalTrackName=variant BTI_merge_rule=UNION nonDeterministicRandomSeed=false DBSNP=null downsampling_type=null downsample_to_fraction=null downsample_to_coverage=null baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 interval_merging=ALL read_group_black_list=null processingTracker=null restartProcessingTracker=false processingTrackerStatusFile=null processingTrackerID=-1 allow_intervals_with_unindexed_bam=false disable_experimental_low_memory_sharding=false logging_level=INFO log_to_file=null help=false out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sampleName=null annotation=[] group=[] expression=[] useAllAnnotations=false list=false assume_single_sample_reads=null vcfContainsOnlyIndels=false"
##commandline="freebayes -f /data/reference/ucsc/hg19/ucsc.hg19.fasta -r chr22:42522301..42527953 -F 0.3 -_ -E0 reads.bam"
##fileDate=20120116
##phasing=none
##reference=/data/reference/ucsc/hg19/ucsc.hg19.fasta
##source=freeBayes version 0.9.4
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT BLANK NA12878 NA12891 NA12892 NA19238 NA19239 NA19240
chr22 42522347 . C CG 49314.70 . AB=0.323285;ABP=2684.52;AC=7;AF=0.5;AN=14;AO=3196;BVAR;CIGAR=1M1I;DP=9886;DPRA=0;EPP=6943.04;EPPR=12096.8;HWE=32.3452;LEN=1;MEANALT=2.42857;MQM=253.864;MQMR=253.934;NS=7;NUMALT=1;ODDS=14.6885;PAIRED=0;PAIREDR=0;RO=6668;RPP=6943.04;RPPR=12096.8;RUN=1;SAP=6943.04;SRP=14482.4;TYPE=ins;XAI=0.00985694;XAM=0.0142524;XAS=0.00439544;XRI=0.00449157;XRM=0.00877419;XRS=0.00428262 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:4:-14.345,-0.425969,-6.27:63.79:151:66:2 0/1:312:923:-1868.25,-25.7518,-1567.55:99:20722:17385:610 0/1:988:2775:-5832.11,-59.3281,-4528.72:99:64717:50239:1784 0/1:880:2420:-5257.02,-58.6397,-3923.11:99:58207:43390:1533 0/1:260:917:-1541.81,-50.7324,-1710.02:99:17009:18882:655 0/1:414:1554:-2406.07,-90.4684,-2968.04:99:26585:32833:1135 0/1:340:1293:-2016.47,-77.6461,-2469.62:99:22279:27318:949
chr22 42522392 rs28371738 G A 43456.30 . AB=0.329255;ABP=1348.16;AC=2;AF=0.142857;AN=14;AO=1762;BVAR;CIGAR=1X;DB;DP=14230;DPRA=474.167;EPP=3829.14;EPPR=17879.7;HWE=-23.8382;LEN=1;MEANALT=3;MQM=254;MQMR=253.948;NS=7;NUMALT=1;ODDS=4.47734;PAIRED=0;PAIREDR=0;RO=12423;RPP=3829.14;RPPR=17879.7;RUN=1;SAP=3829.14;SRP=26979.2;TYPE=snp;XAI=0.00617283;XAM=0.00958286;XAS=0.00341003;XRI=0.00656323;XRM=0.0107744;XRS=0.00421113 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:5:0,-1.50515,-15.456:19.49:0:168:5 0/1:597:1283:-1570.79,-15.0862,-1795.79:99:17317:19817:681 0/1:1152:4029:-3001.7,-208.184,-7622.12:99:32877:84215:2863 0/0:2:3587:-22.0825,-1088.23,-9483.68:99:56:105185:3579 0/0:2:1264:-14.26,-383.779,-3301.85:99:47:36576:1259 0/0:3:2200:-29,-672.331,-5750.12:99:81:63649:2189 0/0:6:1862:-42.8853,-566.938,-4826.72:99:189:53343:1847
chr22 42522398 . C CC 49314.70 . AB=0.244269;ABP=6346.9;AC=7;AF=0.5;AN=14;AO=2728;BVAR;CIGAR=1M1I;DP=11168;DPRA=0;EPP=5926.79;EPPR=9594.88;HWE=32.3452;LEN=1;MEANALT=4;MQM=253.766;MQMR=254;NS=7;NUMALT=1;ODDS=17.2616;PAIRED=0;PAIREDR=0;REPEAT=C:4;RO=8188;RPP=5926.79;RPPR=9594.88;RUN=1;SAP=5926.79;SRP=17783;TYPE=ins;XAI=0.0106905;XAM=0.0164587;XAS=0.00576816;XRI=0.00487639;XRM=0.00890377;XRS=0.00402737 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:5:-9.69,-0.50515,-7.46667:74.94:102:80:3 0/1:319:996:-1378.62,-95.2277,-1537.54:99:14560:16328:654 0/1:1170:3226:-5184.36,-391.876,-4771.07:99:53726:49136:1933 0/1:782:2928:-3441.77,-377.026,-4981.22:99:35505:52612:2058 0/1:100:930:-361.924,-149.055,-1872.16:99:3953:20735:828 0/1:196:1684:-755.869,-268.786,-3390.82:99:8113:37392:1479 0/1:159:1399:-580.078,-228.05,-2817.97:99:6197:31064:1233
chr22 42522445 . GG G 49314.70 . AB=0.763267;ABP=6106.23;AC=8;AF=0.571429;AN=14;AO=7742;BVAR;CIGAR=1M1D;DP=10142;DPRA=0;EPP=16814.5;EPPR=5.74435;HWE=27.36;LEN=1;MEANALT=5.28571;MQM=253.943;MQMR=253.997;NS=7;NUMALT=1;ODDS=1.54045;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=2231;RPP=16814.5;RPPR=5.74435;RUN=1;SAP=16814.5;SRP=4847.57;TYPE=del;XAI=0.00589821;XAM=0.00994331;XAS=0.0040451;XRI=0.00484959;XRM=0.00960629;XRS=0.0047567 GT:AO:DP:GL:GQ:QA:QR:RO 1/1:4:4:-23.31,-1.20412,0:7.53:252:0:0 0/1:780:978:-3545.95,-153.89,-448.542:99:38694:4281:177 0/1:2946:3246:-13711.6,-661.898,-678.041:99:151320:6506:267 0/1:2289:2667:-10498.1,-403.345,-824.102:99:115985:8499:356 0/1:398:755:-1687.49,-66.5289,-800.349:99:18040:8185:333 0/1:741:1365:-3227.14,-132.553,-1442.24:99:34447:14617:583 0/1:584:1127:-2499.48,-75.2063,-1217.5:99:26963:12721:515
chr22 42522450 . GG G 49314.70 . AB=0.204125;ABP=7117.88;AC=6;AF=0.428571;AN=14;AO=1910;BVAR;CIGAR=1M1D;DP=9360;DPRA=519.833;EPP=4150.52;EPPR=56.2176;HWE=27.36;LEN=1;MEANALT=7.83333;MQM=253.996;MQMR=253.934;NS=7;NUMALT=1;ODDS=0.847298;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=6827;RPP=4150.52;RPPR=56.2176;RUN=1;SAP=4150.52;SRP=14827.7;TYPE=del;XAI=0.0040096;XAM=0.00831852;XAS=0.00430893;XRI=0.00611378;XRM=0.010441;XRS=0.00432722 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:3:0,-0.90309,-8.30667:5.23:0:89:3 0/1:183:833:-1113.28,-218.396,-1571.31:99:10516:15608:597 0/1:287:2506:-1853.39,-789.538,-5328.9:99:15491:54110:2064 0/1:439:2260:-2536.87,-588.332,-4382.28:99:23547:44054:1684 0/1:266:882:-1566.08,-225.115,-1517.13:99:15161:14620:552 0/1:390:1564:-2300.1,-414.776,-2910.79:99:21744:28532:1062 0/1:345:1312:-1991.11,-359.693,-2399.95:99:18700:23245:865
chr22 42522481 . G GG 49314.70 . AB=0.275316;ABP=7147.74;AC=7;AF=0.5;AN=14;AO=4486;BVAR;CIGAR=1M1I;DP=16294;DPRA=0;EPP=9744.24;EPPR=3051.34;HWE=32.3452;LEN=1;MEANALT=5.42857;MQM=253.3;MQMR=253.61;NS=7;NUMALT=1;ODDS=29.2938;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=11667;RPP=9744.24;RPPR=3051.34;RUN=1;SAP=9744.24;SRP=25337.6;TYPE=ins;XAI=0.0099545;XAM=0.0149437;XAS=0.00498925;XRI=0.00773094;XRM=0.0121752;XRS=0.00444426 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:7:-16.055,-0.784991,-12.972:99:169:141:5 0/1:439:1495:-3012.85,-119.709,-2985.34:99:32762:32461:1037 0/1:1496:4506:-10120.6,-230.155,-8376.7:99:111114:91742:2975 0/1:1297:4082:-8913.17,-246.525,-7786.21:99:97594:85077:2746 0/1:321:1494:-2240.23,-132.542,-3332.48:99:24665:36806:1167 0/1:503:2551:-3645.59,-284.87,-5866.52:99:39729:64411:2027 0/1:428:2159:-3102.26,-247.798,-4927.1:99:33716:53997:1710
chr22 42522493 . G GG 49314.70 . AB=0.267346;ABP=6697.96;AC=6;AF=0.428571;AN=14;AO=3807;BVAR;CIGAR=1M1I;DP=14245;DPRA=474.667;EPP=8269.81;EPPR=9535.75;HWE=27.36;LEN=1;MEANALT=4.33333;MQM=253.418;MQMR=253.78;NS=7;NUMALT=1;ODDS=2.23359;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=10348;RPP=8269.81;RPPR=9535.75;RUN=1;SAP=8269.81;SRP=22473.4;TYPE=ins;XAI=0.0087646;XAM=0.0139561;XAS=0.00519154;XRI=0.00736916;XRM=0.0116904;XRS=0.00432124 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:5:0,-1.50515,-13.8:10.14:0:150:5 0/1:142:1267:-783.141,-204.386,-2830.15:99:8523:31271:1120 0/1:315:3688:-1230.9,-706.658,-8417.08:99:12946:92794:3359 0/1:419:3355:-1980.77,-522.375,-7363.36:99:21293:81102:2916 0/1:673:1417:-4119.07,-23.454,-1861.3:99:45528:20446:736 0/1:1228:2459:-7460.67,-84.2691,-3114.46:99:81977:33690:1205 0/1:1030:2054:-6305.98,-48.009,-2607.49:99:69549:28459:1007
chr22 42522597 . C T 96.33 . AB=0.307692;ABP=7.18621;AC=1;AF=0.0714286;AN=14;AO=38;BVAR;CIGAR=1X;DP=32021;DPRA=0;EPP=11.239;EPPR=6737.36;HWE=-19.2686;LEN=1;MEANALT=3.42857;MQM=253.526;MQMR=251.934;NS=7;NUMALT=1;ODDS=22.1808;PAIRED=0;PAIREDR=0;RO=31891;RPP=11.239;RPPR=6737.36;RUN=1;SAP=85.5263;SRP=69253.4;TYPE=snp;XAI=0.0148461;XAM=0.0190344;XAS=0.00418822;XRI=0.0105127;XRM=0.0154331;XRS=0.00492039 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:4:13:-13.505,-1.05908,-28.5178:96.33:146:313:9 0/0:1:3217:-44.226,-1003.84,-9970.72:99:29:110325:3207 0/0:11:7924:-201.155,-2504.29,-24949.4:99:395:275377:7875 0/0:3:7513:-111.213,-2346.08,-23642.5:99:107:261568:7489 0/0:3:3790:-28.47,-1147.75,-11551.7:99:113:128150:3782 0/0:15:5314:-99.9496,-1608.09,-16487.3:99:492:182574:5287 0/0:1:4250:-33.3975,-1303.45,-13318.6:99:40:147655:4242
chr22 42522613 rs1135840 G C 49314.70 . AB=0.523755;ABP=102.362;AC=6;AF=0.428571;AN=14;AO=10639;BVAR;CIGAR=1X;DB;DP=26168;DPRA=0;EPP=20.2941;EPPR=15968.8;HWE=27.36;LEN=1;MEANALT=7.71429;MQM=251.192;MQMR=253.005;NS=7;NUMALT=1;ODDS=18.9397;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=15052;RPP=20.2941;RPPR=15968.8;RUN=1;SAP=23105.3;SRP=32688;TYPE=snp;XAI=0.0103845;XAM=0.0142063;XAS=0.00382179;XRI=0.00770109;XRM=0.01166;XRS=0.00395894 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:4:14:-9.3425,-1.21399,-26.936:82.25:101:296:10 0/1:1608:2751:-5058.61,-186.196,-3025.01:99:54392:31797:1098 0/0:23:5899:-548.13,-2153.84,-15664.2:99:733:168690:5743 0/1:2498:6226:-7979.11,-482.722,-9990.57:99:83803:106153:3605 0/1:1793:3122:-5577.1,-181.206,-3494.54:99:60175:37036:1290 0/1:2665:4527:-8378.44,-311.61,-4971.36:99:90068:52212:1793 0/1:2048:3629:-6553.42,-263.327,-4205.55:99:70106:44019:1513
chr22 42522653 . G GG 49314.70 . AB=0.356697;ABP=5746.74;AC=7;AF=0.5;AN=14;AO=11486;BVAR;CIGAR=1M1I;DP=32201;DPRA=0;EPP=24109.1;EPPR=37710.6;HWE=32.3452;LEN=1;MEANALT=8.85714;MQM=252.974;MQMR=250.797;NS=7;NUMALT=1;ODDS=54.8531;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=19298;RPP=24109.1;RPPR=37710.6;RUN=1;SAP=24944.5;SRP=41908.1;TYPE=ins;XAI=0.00769831;XAM=0.012125;XAS=0.00442665;XRI=0.0102852;XRM=0.0150902;XRS=0.00480498 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:8:18:-52.7533,-4.83172,-28.119:8.45:538:268:9 0/1:1357:3316:-8321.37,-607.194,-5523.97:5.74:85869:54790:1780 0/1:2257:7804:-13957.9,-1207.96,-15590:5.74:144664:162802:5261 0/1:2469:7545:-15341.5,-1141.83,-14279:5.74:159601:147799:4779 0/1:1857:3893:-11409.4,-733.912,-5652.31:5.74:118636:54672:1805 0/1:2063:5371:-12696.7,-825.549,-9206.86:5.74:132398:93625:3067 0/1:1475:4254:-9025.63,-647.687,-7756.42:5.74:93862:79763:2597
chr22 42522665 . G GG 49314.70 . AB=0.339765;ABP=7654.34;AC=7;AF=0.5;AN=14;AO=11657;BVAR;CIGAR=1M1I;DP=34309;DPRA=0;EPP=25107.8;EPPR=41318;HWE=32.3452;LEN=1;MEANALT=6.28571;MQM=253.063;MQMR=249.938;NS=7;NUMALT=1;ODDS=60.2651;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=22103;RPP=25107.8;RPPR=41318;RUN=1;SAP=25315.9;SRP=47999.1;TYPE=ins;XAI=0.00786963;XAM=0.0126117;XAS=0.00474208;XRI=0.0111531;XRM=0.0160688;XRS=0.00491569 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:6:17:-51.5689,-10.8169,-36.4545:99:458:293:8 0/1:1509:3582:-10938.4,-106.562,-6620.12:99:120567:72591:2047 0/1:2511:8495:-18491.7,-556.179,-19203.8:99:202709:210627:5911 0/1:2644:8096:-19344,-455.974,-17505.3:99:212182:191756:5380 0/1:1750:4086:-12361.5,-384.352,-7093.96:99:133227:74703:2213 0/1:1875:5602:-13424.3,-562.822,-11401.8:99:144233:121765:3582 0/1:1362:4431:-9726.5,-449.15,-9382.48:99:104561:100743:2962
chr22 42522761 . GG G 49314.70 . AB=0.204235;ABP=20420;AC=7;AF=0.5;AN=14;AO=5488;BVAR;CIGAR=1M1D;DP=26871;DPRA=0;EPP=2628.63;EPPR=38224.7;HWE=32.3452;LEN=1;MEANALT=5.57143;MQM=242.051;MQMR=246.545;NS=7;NUMALT=1;ODDS=41.4976;PAIRED=0;PAIREDR=0;REPEAT=G:4|GGAGG:2;RO=20804;RPP=2628.63;RPPR=38224.7;RUN=1;SAP=11920.1;SRP=45178.3;TYPE=del;XAI=0.0140584;XAM=0.019722;XAS=0.00566356;XRI=0.00767435;XRM=0.0123147;XRS=0.00464034 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:5:14:-18.4,-0.912956,-24.2356:99:200:266:9 0/1:420:2720:-1745.05,-463.283,-5958.47:99:17558:64375:2240 0/1:905:6520:-3835.58,-1186.84,-14691.4:99:38227:158849:5478 0/1:835:6256:-3594.83,-1224.77,-14181.8:99:35041:152675:5279 0/1:1118:3299:-4601.14,-274.605,-5618.54:99:48842:60148:2112 0/1:1279:4472:-5331.58,-462.708,-8350.58:99:55992:89538:3094 0/1:926:3590:-3866.11,-375.706,-6985.01:99:40783:75439:2592
chr22 42522766 . GG G 49314.70 . AB=0.188312;ABP=20709.7;AC=7;AF=0.5;AN=14;AO=4621;BVAR;CIGAR=1M1D;DP=24539;DPRA=0;EPP=683.074;EPPR=36600.1;HWE=32.3452;LEN=1;MEANALT=7;MQM=199.42;MQMR=246.176;NS=7;NUMALT=1;ODDS=29.82;PAIRED=0;PAIREDR=0;REPEAT=G:4|GGAGG:2;RO=19039;RPP=683.074;RPPR=36600.1;RUN=1;SAP=10037.4;SRP=41345.7;TYPE=del;XAI=0.0164268;XAM=0.025017;XAS=0.00859015;XRI=0.00804322;XRM=0.0126973;XRS=0.00465405 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:3:10:-13.3467,-0.931119,-20.48:99:143:224:7 0/1:512:2478:-2822.26,-530.665,-5284.02:99:27408:54763:1844 0/1:1118:6101:-5733.57,-1156.46,-13410:99:56779:142075:4778 0/1:1014:5711:-5251.9,-1045.33,-12611.5:99:52560:134335:4524 0/1:554:2776:-2913.24,-581.301,-5849.66:99:28242:60871:2099 0/1:799:4078:-4067.39,-771.347,-8644.61:99:40192:91052:3123 0/1:621:3385:-3159.49,-586.007,-7289.93:99:31914:77810:2664
chr22 42522804 . C CC 49314.70 . AB=0.436269;ABP=945.17;AC=7;AF=0.5;AN=14;AO=11651;BVAR;CIGAR=1M1I;DP=26706;DPRA=0;EPP=24827.4;EPPR=29210.9;HWE=32.3452;LEN=1;MEANALT=6.85714;MQM=166.646;MQMR=250.486;NS=7;NUMALT=1;ODDS=66.1659;PAIRED=0;PAIREDR=0;REPEAT=C:4;RO=14852;RPP=24827.4;RPPR=29210.9;RUN=1;SAP=25302.8;SRP=32253.7;TYPE=ins;XAI=0.00729807;XAM=0.0121265;XAS=0.00482838;XRI=0.0100055;XRM=0.0150513;XRS=0.00504574 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:7:17:-40.96,-0.828635,-29.029:99:448:319:10 0/1:1166:3000:-6088.08,-135.243,-5172.61:99:66493:56324:1803 0/1:2133:5132:-11704,-132.922,-8486.59:99:128918:93172:2968 0/1:2406:5609:-13279.5,-191.303,-9059.53:99:145687:98802:3154 0/1:1986:4431:-10743.9,-121.076,-6964.79:99:118151:76164:2414 0/1:2282:4928:-12318.7,-122.315,-7470.76:99:135588:81725:2611 0/1:1671:3589:-9215.52,-92.344,-5437.21:99:101420:59442:1892
chr22 42523003 rs116917064 A G 49314.70 . AB=0.468531;ABP=212.109;AC=8;AF=0.571429;AN=14;AO=14108;BVAR;CIGAR=1X;DB;DP=27088;DPRA=0;EPP=652.377;EPPR=1855.41;HWE=27.36;LEN=1;MEANALT=4.14286;MQM=156.904;MQMR=253.368;NS=7;NUMALT=1;ODDS=1.29358;PAIRED=0;PAIREDR=0;REPEAT=A:2;RO=12789;RPP=652.377;RPPR=1855.41;RUN=1;SAP=30638.1;SRP=27774;TYPE=snp;XAI=0.00965842;XAM=0.0142266;XAS=0.0045682;XRI=0.00999007;XRM=0.0136964;XRS=0.00370629 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:8:-2,-1.50515,-24.1371:6.67:20:264:7 1/1:2718:2778:-8910.09,-855.467,-193.047:99:97866:1010:32 0/1:1950:4864:-6654.88,-209.642,-9266.39:99:72073:101090:2881 0/1:2904:5999:-9556.65,-180.406,-9821.6:99:104213:107157:3054 0/1:2200:4579:-7199.46,-113.291,-7604.37:99:78771:83270:2355 0/1:2640:5210:-8728.2,-201.588,-8303.22:99:94770:90048:2535 0/1:1695:3650:-5594.22,-119.143,-6247.26:99:60891:68147:1925
chr22 42523024 . G GG 49314.70 . AB=0.483312;ABP=67.2233;AC=7;AF=0.5;AN=14;AO=12830;BVAR;CIGAR=1M1I;DP=26546;DPRA=0;EPP=25392.7;EPPR=27073.2;HWE=32.3452;LEN=1;MEANALT=6.71429;MQM=251.049;MQMR=166.263;NS=7;NUMALT=1;ODDS=38.6958;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=13355;RPP=25392.7;RPPR=27073.2;RUN=1;SAP=27863;SRP=29003;TYPE=ins;XAI=0.00784045;XAM=0.0135446;XAS=0.00570417;XRI=0.00883571;XRM=0.0139225;XRS=0.00508683 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:4:10:-25.9925,-0.688081,-16.9583:99:281:185:6 0/1:1056:2546:-7646.47,-89.6276,-3943.82:99:84145:43010:1470 0/1:2120:4610:-15016.9,-168.685,-6726.18:99:165053:72939:2444 0/1:2981:5853:-20954.2,-270.695,-7762.53:99:229849:83280:2795 0/1:2329:4633:-16752,-285.271,-6516.22:99:182987:69261:2223 0/1:2603:5237:-18711.9,-283.694,-7428.37:99:204776:79409:2550 0/1:1737:3657:-12494.8,-184.354,-5429.11:99:136810:58308:1867
chr22 42523063 . C CG 49314.70 . AB=0.135326;ABP=37560.2;AC=7;AF=0.5;AN=14;AO=4400;BVAR;CIGAR=1M1I;DP=32514;DPRA=0;EPP=8808.42;EPPR=43500.8;HWE=32.3452;LEN=1;MEANALT=5.42857;MQM=151.564;MQMR=201.235;NS=7;NUMALT=1;ODDS=51.8508;PAIRED=0;PAIREDR=0;REPEAT=CA:2;RO=27776;RPP=8808.42;RPPR=43500.8;RUN=1;SAP=9557.49;SRP=60317.8;TYPE=ins;XAI=0.0122678;XAM=0.0192223;XAS=0.00695447;XRI=0.00950941;XRM=0.014938;XRS=0.00542861 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:6:17:-23.0083,-1.02493,-36.8182:8.45:251:405:11 0/1:480:3428:-2380.65,-553.906,-9740.35:5.74:24990:106766:2913 0/1:912:5955:-4554.97,-927.069,-16809.1:5.74:47780:183939:4978 0/1:1071:7331:-5606.9,-1259.81,-20745.5:5.74:57859:226068:6155 0/1:663:5367:-3482.19,-925.967,-15605.8:5.74:36562:171271:4657 0/1:771:6162:-3969.27,-1042.63,-17864:5.74:41803:196191:5341 0/1:497:4254:-2561.48,-752.897,-12506:5.74:26842:137338:3721
chr22 42523185 . C CC 49314.70 . AB=0.128841;ABP=26211.3;AC=7;AF=0.5;AN=14;AO=2822;BVAR;CIGAR=1M1I;DP=21903;DPRA=0;EPP=6052.98;EPPR=7788.88;HWE=32.3452;LEN=1;MEANALT=6.71429;MQM=253.731;MQMR=252.855;NS=7;NUMALT=1;ODDS=29.2813;PAIRED=0;PAIREDR=0;REPEAT=C:3|CA:2;RO=18639;RPP=6052.98;RPPR=7788.88;RUN=1;SAP=6130.91;SRP=40477.1;TYPE=ins;XAI=0.00972057;XAM=0.0158303;XAS=0.0061097;XRI=0.0100021;XRM=0.0159483;XRS=0.00594616 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:3:9:-26.085,-6.06005,-18.2417:99:228:145:5 0/1:390:2129:-2278.91,-381.007,-5102.97:99:23194:54575:1680 0/1:632:3957:-3641.33,-704.883,-9670.37:99:37274:104266:3237 0/1:603:4860:-3414.89,-904.376,-12582.3:99:35177:137040:4184 0/1:439:3809:-2497.94,-822.273,-9905.82:99:24574:106886:3285 0/1:445:4226:-2509.37,-913.366,-11109:99:24795:120349:3700 0/1:310:2913:-1758.96,-624.787,-7688.58:99:17443:83330:2548
chr22 42523196 . C CC 49314.70 . AB=0.460186;ABP=247.332;AC=7;AF=0.5;AN=14;AO=8166;BVAR;CIGAR=1M1I;DP=17745;DPRA=0;EPP=9884.78;EPPR=14169.1;HWE=32.3452;LEN=1;MEANALT=8.71429;MQM=253.592;MQMR=252.804;NS=7;NUMALT=1;ODDS=5.2249;PAIRED=0;PAIREDR=0;REPEAT=C:5;RO=8565;RPP=9884.78;RPPR=14169.1;RUN=1;SAP=17735.3;SRP=18601.7;TYPE=ins;XAI=0.00805591;XAM=0.0142255;XAS=0.00616964;XRI=0.0093278;XRM=0.0151086;XRS=0.0057808 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:4:-15.68,-6.62597,-8.36:22.71:106:26:1 0/1:994:1818:-4991.73,-335.769,-2017.08:99:51844:18795:736 0/1:1411:3147:-7241.19,-729.322,-4269.96:99:72393:39382:1564 0/1:1380:3839:-7267.64,-1071.57,-6155.74:99:69345:56993:2222 0/1:1491:3106:-7461.86,-638.949,-3928.14:99:75832:36571:1433 0/1:1680:3409:-8413.34,-630.662,-4166.46:99:86508:39323:1540 0/1:1208:2422:-6145.43,-509.447,-2966.4:99:62661:27341:1069
chr22 42523209 rs28371730 T C 49314.70 . AB=0.443371;ABP=608.264;AC=8;AF=0.571429;AN=14;AO=11957;BVAR;CIGAR=1X;DB;DP=24131;DPRA=0;EPP=4.14371;EPPR=8892.97;HWE=27.36;LEN=1;MEANALT=7;MQM=252.829;MQMR=252.315;NS=7;NUMALT=1;ODDS=24.4923;PAIRED=0;PAIREDR=0;RO=12027;RPP=4.14371;RPPR=8892.97;RUN=1;SAP=25967.3;SRP=26119.3;TYPE=snp;XAI=0.00930025;XAM=0.0151585;XAS=0.00585823;XRI=0.0111776;XRM=0.0150637;XRS=0.00388618 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:5:8:-14.72,-0.660052,-11.2:99:160:120:3 1/1:2323:2402:-7362.62,-677.087,-253.706:99:80975:1987:56 0/1:1685:4525:-5503.32,-155.907,-8901.8:99:60132:97893:2817 0/1:2374:5243:-7423,-128.437,-8982.89:99:81172:98504:2836 0/1:1951:4137:-6087.4,-75.3597,-6850.25:99:66848:75324:2163 0/1:2224:4625:-7056.62,-134.339,-7538.39:99:76947:82300:2366 0/1:1395:3191:-4375.07,-40.7008,-5604.2:99:48296:61953:1786
chr22 42523211 rs2004511 T C 49314.70 . AB=0.392278;ABP=686.977;AC=2;AF=0.142857;AN=14;AO=2813;BVAR;CIGAR=1X;DB;DP=23200;DPRA=552.214;EPP=1120.17;EPPR=8964.97;HWE=-23.8382;LEN=1;MEANALT=4;MQM=253.316;MQMR=252.359;NS=7;NUMALT=1;ODDS=5.86363;PAIRED=0;PAIREDR=0;REPEAT=T:2;RO=20348;RPP=1120.17;RPPR=8964.97;RUN=1;SAP=6111.36;SRP=44188.1;TYPE=snp;XAI=0.00921625;XAM=0.0154942;XAS=0.00627795;XRI=0.0102368;XRM=0.015941;XRS=0.00570418 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:7:0,-2.10721,-22.2171:25.48:0:243:7 0/1:1014:2364:-3350.88,-41.1899,-4045.38:99:36903:44620:1340 0/1:1648:4422:-5461.83,-126.858,-8365.93:99:59975:92243:2753 0/0:45:5055:-150.926,-1417.73,-15116.6:99:1598:167883:5008 0/0:34:3942:-114.573,-1105.44,-11853.7:99:1241:131676:3907 0/0:45:4385:-152.107,-1216.01,-13219.4:99:1646:146838:4339 0/0:27:3025:-98.0903,-854.265,-9137.32:99:970:101406:2994
chr22 42523306 . CC C 49314.70 . AB=0.670466;ABP=5206.75;AC=7;AF=0.5;AN=14;AO=13823;BVAR;CIGAR=1M1D;DP=20617;DPRA=0;EPP=15235.1;EPPR=14118.1;HWE=32.3452;LEN=1;MEANALT=6.42857;MQM=252.336;MQMR=251.475;NS=7;NUMALT=1;ODDS=9.07713;PAIRED=0;PAIREDR=0;REPEAT=C:6;RO=6580;RPP=15235.1;RPPR=14118.1;RUN=1;SAP=30019.3;SRP=14291.3;TYPE=del;XAI=0.0103599;XAM=0.0164589;XAS=0.00609902;XRI=0.00627356;XRM=0.012286;XRS=0.00601247 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:7:9:-40.4114,-1.15297,-4.56:39.42:442:48:2 0/1:1613:2235:-9123.38,-148.139,-1314.59:99:100874:14114:610 0/1:2927:4038:-16883.9,-355.846,-2384.25:99:185836:24733:1067 0/1:2938:4446:-16570.6,-304.06,-3217.11:99:181990:33622:1455 0/1:2190:3415:-12365.9,-223.791,-2621.31:99:135667:27398:1183 0/1:2411:3791:-13700.1,-196.591,-2929.65:99:150797:31130:1345 0/1:1737:2683:-9967.32,-160.651,-2023.17:99:109600:21336:918
chr22 42523409 rs1985842 G T 49314.70 . AB=0.500283;ABP=3.01768;AC=6;AF=0.428571;AN=14;AO=5332;BVAR;CIGAR=1X;DB;DP=13316;DPRA=0;EPP=9214.88;EPPR=15872.5;HWE=27.36;LEN=1;MEANALT=5.14286;MQM=251.425;MQMR=251.591;NS=7;NUMALT=1;ODDS=6.59665;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=7835;RPP=9214.88;RPPR=15872.5;RUN=1;SAP=11581.3;SRP=17016.5;TYPE=snp;XAI=0.0116405;XAM=0.0175057;XAS=0.00586523;XRI=0.0107482;XRM=0.0156757;XRS=0.00492748 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:3:4:-11.2,-0.60206,-3.4:28.65:120:34:1 0/1:818:1655:-2914.85,-117.873,-2376.41:99:31098:25116:812 0/0:36:2730:-206.098,-816.227,-7661.57:99:1393:84233:2679 0/1:1292:2687:-4645.65,-234.164,-4017.92:99:49041:42067:1347 0/1:1107:2142:-3861.56,-75.0295,-2837.91:99:42102:30729:1016 0/1:1254:2390:-4371.77,-66.5941,-3110.88:99:47874:33865:1120 0/1:822:1708:-2952.03,-117.499,-2448.13:99:31517:25919:860
chr22 42523491 . C T 42.82 . AB=0.4;ABP=3.44459;AC=1;AF=0.0714286;AN=14;AO=40;BVAR;CIGAR=1X;DP=24032;DPRA=0;EPP=3.87889;EPPR=2107.06;HWE=-19.2686;LEN=1;MEANALT=3.71429;MQM=251.675;MQMR=250.58;NS=7;NUMALT=1;ODDS=9.85952;PAIRED=0;PAIREDR=0;RO=23947;RPP=3.87889;RPPR=2107.06;RUN=1;SAP=89.8692;SRP=52003.3;TYPE=snp;XAI=0.00950034;XAM=0.0156976;XAS=0.00619727;XRI=0.0104341;XRM=0.0159446;XRS=0.0055105 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:5:-7.6,-0.50515,-10.08:42.82:80:108:3 0/0:6:2916:-51.3754,-892.608,-8773.62:99:185:97100:2903 0/0:4:4925:-50.1046,-1504.93,-14772.9:99:130:163718:4912 0/0:6:4939:-50.2557,-1498.57,-14779.3:99:187:163844:4925 0/0:7:3780:-65.4047,-1157.6,-11423.7:99:238:126442:3763 0/0:6:4333:-47.4723,-1313.93,-13013.2:99:188:144252:4320 0/0:9:3134:-49.1969,-936.124,-9416.22:99:328:104407:3121
chr22 42523507 . A G 15.11 . AB=0.333333;ABP=4.45795;AC=1;AF=0.0714286;AN=14;AO=16;BVAR;CIGAR=1X;DP=18969;DPRA=0;EPP=22.5536;EPPR=4590.81;HWE=-19.2686;LEN=1;MEANALT=5.14286;MQM=254;MQMR=251.143;NS=7;NUMALT=1;ODDS=3.44697;PAIRED=0;PAIREDR=0;RO=18762;RPP=22.5536;RPPR=4590.81;RUN=1;SAP=37.7539;SRP=40744.2;TYPE=snp;XAI=0.00640924;XAM=0.0136914;XAS=0.0072822;XRI=0.00854323;XRM=0.013902;XRS=0.00535874 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:6:-4.94,-0.630089,-12.3025:15.11:52:133:4 0/0:1:2288:-84.8712,-760.863,-6855.72:99:21:75253:2262 0/0:2:3771:-93.3143,-1209.36,-11313.4:99:43:124711:3741 0/0:4:3846:-118.687,-1244.7,-11489.4:99:92:126433:3807 0/0:1:3042:-116.188,-1016.02,-9189.16:99:21:100832:3006 0/0:4:3441:-148.072,-1150.71,-10339.5:99:97:113336:3398 0/0:2:2575:-112.994,-868.958,-7707.57:99:44:84429:2544
chr22 42523523 . C CC 49314.70 . AB=0.422182;ABP=1257.85;AC=7;AF=0.5;AN=14;AO=10072;BVAR;CIGAR=1M1I;DP=23857;DPRA=0;EPP=20021.5;EPPR=26154.3;HWE=32.3452;LEN=1;MEANALT=9;MQM=253.268;MQMR=248.843;NS=7;NUMALT=1;ODDS=22.9683;PAIRED=0;PAIREDR=0;REPEAT=C:4;RO=13562;RPP=20021.5;RPPR=26154.3;RUN=1;SAP=21874.1;SRP=29452.5;TYPE=ins;XAI=0.00682993;XAM=0.0109511;XAS=0.00412119;XRI=0.0113604;XRM=0.0177437;XRS=0.00638338 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:6:-10.07,-0.630089,-11.84:99:106:128:4 0/1:1134:2897:-5666.4,-100.954,-4857.25:99:62168:53180:1741 0/1:1876:4838:-9390.79,-164.038,-8231.53:99:103096:90218:2925 0/1:1987:4844:-10189.7,-189.819,-7871.35:99:111466:85709:2803 0/1:1660:3789:-8827.96,-131.266,-5621.42:99:96768:61143:2091 0/1:1929:4331:-10341.4,-151.414,-6326.21:99:113344:68734:2357 0/1:1484:3152:-7996.19,-95.2844,-4453.23:99:87825:48462:1641
chr22 42523562 . G GG,GGG 49314.70 . AB=0.614797,0.149956;ABP=1440.34,13367.3;AC=7,4;AF=0.5,0.285714;AN=14;AO=7720,1883;BVAR;CIGAR=1M1I,1M2I;DP=12557;DPRA=0,0;EPP=16766.8,4091.89;EPPR=337.212;HWE=26.0206;LEN=1,2;MEANALT=6,6;MQM=253.984,253.971;MQMR=253.984;NS=7;NUMALT=2;ODDS=2.30259;PAIRED=0,0;PAIREDR=0;REPEAT=G:3;RO=2882;RPP=16766.8,4091.89;RPPR=337.212;RUN=1,1;SAP=16766.8,4091.89;SRP=6261.19;TYPE=ins,ins;XAI=0.00633177,0.00852945;XAM=0.0107965,0.0123093;XAS=0.0044647,0.00377989;XRI=0.0075723;XRM=0.0127106;XRS=0.00513834 GT:AO:DP:GL:GQ:QA:QR:RO 1/2:1,1:3:-7.03,-3.40103,-4.94,-4.60103,-2.40103,-6.08:9.38:43,31:21:1 0/1:911,150:1500:-6303.26,-547.032,-1695.02,-5863.78,-1357.05,-7020.67:6.99:64405,5234:13206:427 0/1:1487,283:2498:-10626.8,-1054.73,-2967.36,-9747.25,-2242.05,-11680.8:6.20:107056,10243:21955:707 0/1:1506,281:2555:-10777,-1011.49,-3070.41,-9915.99,-2360.92,-11981.7:6.02:109137,10126:23512:754 1/2:1232,371:1954:-9144.81,-1372.68,-2252.69,-7903.07,-1116.67,-8897.48:6.99:87645,13817:11069:346 1/2:1484,450:2339:-11001.5,-1724.33,-2680.64,-9470.68,-1275.48,-10573.3:6.20:104730,17037:12279:392 1/2:1099,347:1708:-8229.33,-1295.3,-1888.54,-7084.39,-829.79,-7797.7:6.99:78427,12773:7977:255
chr22 42523765 . GG G 49314.70 . AB=0.209644;ABP=25864.9;AC=7;AF=0.5;AN=14;AO=7404;BVAR;CIGAR=1M1D;DP=35317;DPRA=0;EPP=15538;EPPR=43222.2;HWE=32.3452;LEN=1;MEANALT=5.71429;MQM=253.504;MQMR=244.529;NS=7;NUMALT=1;ODDS=30.5173;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=27735;RPP=15538;RPPR=43222.2;RUN=1;SAP=16080.6;SRP=60228.8;TYPE=del;XAI=0.00361575;XAM=0.00855302;XAS=0.00493727;XRI=0.00838546;XRM=0.0135256;XRS=0.00514013 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:7:12:-49.1886,-0.713635,-13.432:99:538:146:5 0/1:1084:4095:-7394.33,-303.287,-8504.32:99:81025:93363:2980 0/1:1995:7218:-13492.3,-385.083,-14673.7:99:149233:162365:5206 0/1:2001:7328:-13589,-482.407,-15068.3:99:149343:165784:5281 0/1:836:5671:-5525.72,-772.877,-13750.5:99:60270:151661:4804 0/1:826:6262:-5571.46,-894.445,-15512.9:99:61085:171550:5414 0/1:655:4731:-4387.76,-695.979,-11682.2:99:47598:128652:4045
chr22 42523805 rs28371725 C T 49314.70 . AB=0.490053;ABP=9.96529;AC=1;AF=0.0714286;AN=14;AO=4049;BVAR;CIGAR=1X;DB;DP=39296;DPRA=545.611;EPP=43.5679;EPPR=70030.6;HWE=-19.2686;LEN=1;MEANALT=3;MQM=241.321;MQMR=240.745;NS=7;NUMALT=1;ODDS=10.1095;PAIRED=0;PAIREDR=0;REPEAT=C:2|CCTC:2;RO=34673;RPP=43.5679;RPPR=70030.6;RUN=1;SAP=8795.3;SRP=75294.5;TYPE=snp;XAI=0.00796587;XAM=0.0123204;XAS=0.00435452;XRI=0.00808879;XRM=0.0131576;XRS=0.00506879 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:12:0,-3.61236,-37.8775:43.91:0:417:12 0/0:11:4566:-405.253,-1694.04,-14641:99:340:158517:4480 0/1:3966:8093:-13513.5,-1245.58,-13645.8:99:136337:137807:3910 0/0:17:8316:-770.668,-3128.6,-26664.3:99:564:288273:8157 0/0:21:6193:-286.564,-2015.57,-19733.3:99:675:216751:6123 0/0:21:6917:-284.361,-2231.07,-22121.6:99:690:243328:6854 0/0:13:5199:-270.574,-1744.76,-16567.9:99:419:181502:5137
chr22 42523943 rs16947 A G 49314.70 . AB=0.498768;ABP=3.30997;AC=8;AF=0.571429;AN=14;AO=14312;BVAR;CIGAR=1X;DB;DP=25739;DPRA=0;EPP=20419;EPPR=18782.2;HWE=27.36;LEN=1;MEANALT=4.57143;MQM=250.554;MQMR=249.993;NS=7;NUMALT=1;ODDS=39.6117;PAIRED=0;PAIREDR=0;RO=11356;RPP=20419;RPPR=18782.2;RUN=1;SAP=31081.1;SRP=24662.3;TYPE=snp;XAI=0.00694555;XAM=0.010946;XAS=0.00400042;XRI=0.00718971;XRM=0.0117448;XRS=0.00455509 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:5:13:-17.94,-0.803811,-27.5575:99:195:302:8 1/1:2978:3015:-10039.6,-871.086,-121.594:99:111192:992:27 0/1:2631:5364:-8864.83,-31.9242,-9136.09:99:98169:101183:2724 0/1:2687:5402:-9005.68,-23.0104,-9124.57:99:99829:101150:2708 0/1:2123:4192:-7231.34,-89.2803,-6998.24:99:79384:76794:2056 0/1:2265:4380:-7699.97,-53.1487,-7098.94:99:85001:78323:2101 0/1:1623:3373:-5535.82,-80.417,-5895.37:99:60646:64641:1732
chr22 42524125 . T TC 1922.92 . AB=0.0643815;ABP=5532.94;AC=6;AF=0.428571;AN=14;AO=256;BVAR;CIGAR=1M1I;DP=4258;DPRA=0;EPP=541.671;EPPR=916.312;HWE=27.36;LEN=1;MEANALT=3.14286;MQM=250.219;MQMR=252.402;NS=7;NUMALT=1;ODDS=4.50814;PAIRED=0;PAIREDR=0;RO=3975;RPP=541.671;RPPR=916.312;RUN=1;SAP=558.907;SRP=8634.61;TYPE=ins;XAI=0.0114249;XAM=0.0189039;XAS=0.00747896;XRI=0.00845069;XRM=0.0142448;XRS=0.00579416 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:2:-3.9,-0.30103,-2.3:20.64:39:23:1 0/1:28:522:-136.59,-134.729,-1323.03:19.66:1227:14411:486 0/0:40:903:-171.783,-217.508,-2335.26:99:1719:25759:858 0/1:56:962:-263.173,-217.564,-2377.91:99:2685:26184:899 0/1:38:630:-150.707,-135.225,-1571.96:99:1589:17382:589 0/1:59:712:-231.541,-132.236,-1726.04:99:2510:19117:651 0/1:34:527:-140.833,-110.2,-1326.27:99:1500:14673:491
chr22 42524134 . C CC 662.48 . AB=0.0684444;ABP=1822.88;AC=3;AF=0.214286;AN=14;AO=192;BVAR;CIGAR=1M1I;DP=3714;DPRA=0;EPP=257.48;EPPR=1554.36;HWE=-21.3394;LEN=1;MEANALT=1.71429;MQM=249.286;MQMR=251.184;NS=7;NUMALT=1;ODDS=1.20397;PAIRED=0;PAIREDR=0;RO=3512;RPP=257.48;RPPR=1554.36;RUN=1;SAP=419.933;SRP=7629.22;TYPE=ins;XAI=0.015472;XAM=0.0233643;XAS=0.00789225;XRI=0.00824063;XRM=0.0138378;XRS=0.00559712 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:1:-4.9,-0.30103,0:1.14:49:0:0 0/0:19:455:-67.3516,-103.717,-1145.99:99:744:12730:436 0/0:37:793:-142.866,-183.352,-2018.73:99:1484:22328:753 0/0:33:771:-125.317,-178.818,-1924.67:99:1332:21326:736 0/0:26:570:-100.492,-130.311,-1441.91:99:1074:15980:543 0/1:43:637:-174.832,-133.404,-1554.41:99:1831:17161:590 0/1:33:487:-119.471,-95.3335,-1197.29:99:1323:13300:454
chr22 42524154 . CC C 49314.70 . AB=0.783933;ABP=2164.64;AC=8;AF=0.571429;AN=14;AO=2423;BVAR;CIGAR=1M1D;DP=3090;DPRA=0;EPP=1304.3;EPPR=644.489;HWE=27.36;LEN=1;MEANALT=4;MQM=244.278;MQMR=251.367;NS=7;NUMALT=1;ODDS=0.847298;PAIRED=0;PAIREDR=0;REPEAT=C:6;RO=583;RPP=1304.3;RPPR=644.489;RUN=1;SAP=5264.49;SRP=1268.98;TYPE=del;XAI=0.00632062;XAM=0.0109849;XAS=0.00466423;XRI=0.00660059;XRM=0.0128321;XRS=0.00623154 GT:AO:DP:GL:GQ:QA:QR:RO 1/1:3:3:-17.64,-0.90309,0:5.23:189:0:0 0/1:291:409:-1689.47,-69.0984,-255.48:99:18236:2307:105 0/1:489:622:-2715.18,-86.6625,-275.9:99:29784:2685:123 0/1:473:658:-2567.57,-54.8257,-375.525:99:28270:3918:177 0/1:374:467:-2139.37,-124.017,-229.864:99:22925:1712:76 0/1:456:536:-2620.87,-153.631,-200.078:99:28250:1356:61 0/1:337:395:-1959.1,-126.284,-150.858:99:21014:926:41
chr22 42524220 . G GG 37790.70 . AB=0.237258;ABP=2661.72;AC=7;AF=0.5;AN=14;AO=1052;BVAR;CIGAR=1M1I;DP=4434;DPRA=0;EPP=1002.91;EPPR=1209.82;HWE=32.3452;LEN=1;MEANALT=9;MQM=243.04;MQMR=246.215;NS=7;NUMALT=1;ODDS=9.43863;PAIRED=0;PAIREDR=0;REPEAT=G:7|GGCTG:2;RO=2480;RPP=1002.91;RPPR=1209.82;RUN=1;SAP=2287.4;SRP=5388.26;TYPE=ins;XAI=0.00843152;XAM=0.0141226;XAS=0.00569112;XRI=0.00475483;XRM=0.0098892;XRS=0.00513437 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:4:-7.695,-0.425969,-3.99:40.99:81:42:2 0/1:170:582:-1498.83,-871.45,-1378.09:99:7028:5688:254 0/1:214:871:-1622.29,-843.593,-1837.21:99:8954:11344:500 0/1:300:1016:-2487.92,-1358.12,-2278.43:99:12657:10331:464 0/1:106:600:-897.869,-541.78,-1314.21:99:4394:9022:392 0/1:159:742:-1158.22,-619.228,-1516.34:99:6378:10359:462 0/1:101:619:-952.066,-607.543,-1378.56:99:4318:9059:406
chr22 42524225 . G GG 50000 . AB=0.124393;ABP=17173.4;AC=7;AF=0.5;AN=14;AO=1743;BVAR;CIGAR=1M1I;DP=14012;DPRA=0;EPP=3180.37;EPPR=2781.27;HWE=32.3452;LEN=1;MEANALT=4.14286;MQM=251.594;MQMR=245.506;NS=7;NUMALT=1;ODDS=25.0682;PAIRED=0;PAIREDR=0;REPEAT=G:3|GCTGG:2;RO=12201;RPP=3180.37;RPPR=2781.27;RUN=1;SAP=3787.89;SRP=26497.1;TYPE=ins;XAI=0.00477562;XAM=0.00926508;XAS=0.00448945;XRI=0.00536601;XRM=0.0103327;XRS=0.00496664 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:3:7:-14.4667,-0.563142,-10.915:99:155:118:4 0/1:267:1743:-1267.42,-270.023,-3916.91:99:13271:42712:1454 0/1:374:2584:-1743.36,-334.725,-5988.63:99:19137:66309:2203 0/1:496:3002:-2287.85,-353.389,-6629.87:99:25032:73279:2495 0/1:194:2098:-903.189,-400.408,-5239.39:99:9469:57651:1893 0/1:249:2571:-1142.41,-452.739,-6322.71:99:12307:69868:2313 0/1:160:2007:-743.892,-382.039,-5032.02:99:8031:55679:1839
chr22 42524243 rs35742686 CT C 49314.70 . AB=0.526007;ABP=57.1122;AC=2;AF=0.142857;AN=14;AO=4893;BVAR;CIGAR=1M1D;DB;DP=25972;DPRA=216.267;EPP=4874.05;EPPR=6888.19;HWE=-23.8382;LEN=1;MEANALT=8.16667;MQM=242.968;MQMR=248.576;NS=7;NUMALT=1;ODDS=14.8745;PAIRED=0;PAIREDR=0;REPEAT=C:2;RO=20851;RPP=4874.05;RPPR=6888.19;RUN=1;SAP=10628;SRP=45280.4;TYPE=del;XAI=0.00482024;XAM=0.0093771;XAS=0.00455685;XRI=0.00466854;XRM=0.0095398;XRS=0.00487126 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:20:0,-6.0206,-58.3725:64.60:0:645:20 0/1:1800:3366:-16124.1,-94.0429,-4745.5:99:178175:51753:1539 0/0:7:4711:-179.032,-1502.64,-14279.9:99:688:157366:4669 0/1:3044:5843:-27128.6,-111.878,-8455.21:99:300233:92758:2766 0/0:12:3699:-209.745,-1181.93,-11190.9:99:1073:123088:3652 0/0:20:4667:-381.294,-1537.42,-14076.9:99:1939:154114:4583 0/0:10:3666:-187.583,-1175.28,-11093.1:99:850:122024:3622
chr22 42524331 . GG G 49314.70 . AB=0.218956;ABP=20169.1;AC=6;AF=0.428571;AN=14;AO=6436;BVAR;CIGAR=1M1D;DP=29409;DPRA=326.6;EPP=11204.7;EPPR=26976;HWE=27.36;LEN=1;MEANALT=7.16667;MQM=249.563;MQMR=247.755;NS=7;NUMALT=1;ODDS=8.47192;PAIRED=0;PAIREDR=0;REPEAT=G:2|GGA:2;RO=22684;RPP=11204.7;RPPR=26976;RUN=1;SAP=13978.6;SRP=49260.7;TYPE=del;XAI=0.00766115;XAM=0.0116377;XAS=0.00397653;XRI=0.00510003;XRM=0.00998322;XRS=0.0048832 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:15:-2.2,-6.41442,-35.4507:36.79:0:369:14 0/1:521:3627:-2601.52,-557.237,-7794.28:99:27562:85262:3068 0/1:771:5464:-3922.54,-859.467,-11818:99:41439:129169:4632 0/1:1003:6320:-5176.17,-933.998,-13302.1:99:54775:145066:5247 0/1:1320:4389:-6612.48,-274.299,-7883.48:99:72118:86243:3035 0/1:1617:5430:-8070.21,-366.407,-9671.68:99:87738:105535:3761 0/1:1204:4164:-6000.03,-270.34,-7501.33:99:65470:82154:2927
chr22 42524372 . G GG 49314.70 . AB=0.265532;ABP=12738.7;AC=7;AF=0.5;AN=14;AO=7082;BVAR;CIGAR=1M1I;DP=26671;DPRA=0;EPP=8641.95;EPPR=15220.2;HWE=32.3452;LEN=1;MEANALT=6.14286;MQM=253.632;MQMR=253.662;NS=7;NUMALT=1;ODDS=44.887;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=19434;RPP=8641.95;RPPR=15220.2;RUN=1;SAP=15381.4;SRP=42203.4;TYPE=ins;XAI=0.00872115;XAM=0.0131603;XAS=0.00443912;XRI=0.00377633;XRM=0.00840894;XRS=0.00463262 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:5:14:-19.872,-0.912956,-24.3267:99:216:267:9 0/1:562:3165:-2133.68,-366.253,-6341.76:99:23057:69815:2585 0/1:876:4986:-3253,-556.65,-10005.5:99:35420:110449:4088 0/1:1165:5857:-4411.85,-554.741,-11477.4:99:48322:126830:4672 0/1:1422:3899:-5281.87,-155.905,-6198.4:99:57636:67821:2445 0/1:1727:4902:-6396.34,-197.751,-7943.41:99:69898:87089:3140 0/1:1325:3848:-4899.01,-161.998,-6305.05:99:53532:69156:2495
chr22 42524435 rs1807313 T A 49314.70 . AB=0.479859;ABP=48.8463;AC=3;AF=0.214286;AN=14;AO=6305;BVAR;CIGAR=1X;DB;DP=41439;DPRA=0;EPP=109.862;EPPR=13682;HWE=-21.3394;LEN=1;MEANALT=4.71429;MQM=252.852;MQMR=252.696;NS=7;NUMALT=1;ODDS=51.6265;PAIRED=0;PAIREDR=0;RO=34828;RPP=109.862;RPPR=13682;RUN=1;SAP=13694.1;SRP=75631.1;TYPE=snp;XAI=0.0056246;XAM=0.00955321;XAS=0.00392861;XRI=0.00593171;XRM=0.0101544;XRS=0.00422268 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:16:23:-53.5594,-1.53425,-23.1314:99:591:253:7 0/0:14:5231:-145.145,-1632.55,-16321.5:99:400:180137:5183 0/0:24:8051:-202.761,-2475.33,-25292.3:99:768:279541:7987 0/0:15:9302:-237.957,-2933.16,-29385.1:99:443:324300:9228 0/0:10:5847:-121.143,-1812.54,-18360.4:99:328:202987:5810 0/1:3477:7308:-10964.1,-288.414,-12113.4:99:118666:131435:3745 0/1:2749:5677:-8720.26,-193.042,-9216.08:99:94775:100284:2868
chr22 42524445 . G GG 49314.70 . AB=0.379303;ABP=5277.84;AC=7;AF=0.5;AN=14;AO=15812;BVAR;CIGAR=1M1I;DP=41687;DPRA=0;EPP=34078.2;EPPR=46753.2;HWE=32.3452;LEN=1;MEANALT=9.71429;MQM=253.91;MQMR=251.322;NS=7;NUMALT=1;ODDS=40.6431;PAIRED=0;PAIREDR=0;REPEAT=G:3|GCCT:2;RO=24505;RPP=34078.2;RPPR=46753.2;RUN=1;SAP=34338.3;SRP=53214.9;TYPE=ins;XAI=0.00628566;XAM=0.0106844;XAS=0.00439872;XRI=0.00458619;XRM=0.00933889;XRS=0.0047527 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:3:25:-21.28,-4.16402,-65.2177:99:228:721:22 0/1:1883:5150:-12702.8,-500.455,-10090.8:99:136355:107336:3129 0/1:3304:7996:-23002.7,-675.222,-14512.5:99:248541:154210:4494 0/1:3862:9394:-26562.5,-855.83,-17313.9:99:286183:183425:5282 0/1:2140:5891:-14154.3,-881.911,-11841.2:99:148272:122574:3484 0/1:2655:7458:-17362.5,-928.866,-15168.3:99:183803:159427:4525 0/1:1965:5773:-12988.9,-828.124,-12034.9:99:136276:125679:3569
chr22 42524696 rs58440431 T C 49314.70 . AB=0.48713;ABP=24.4184;AC=2;AF=0.142857;AN=14;AO=7488;BVAR;CIGAR=1X;DB;DP=46275;DPRA=856.778;EPP=187.679;EPPR=39404.3;HWE=-23.8382;LEN=1;MEANALT=7;MQM=248.314;MQMR=247.047;NS=7;NUMALT=1;ODDS=7.24993;PAIRED=0;PAIREDR=0;RO=38638;RPP=187.679;RPPR=39404.3;RUN=1;SAP=16263;SRP=83904.4;TYPE=snp;XAI=0.00819389;XAM=0.013411;XAS=0.00521709;XRI=0.00903367;XRM=0.0138483;XRS=0.00481465 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:9:0,-2.70927,-29.8844:31.49:0:328:9 0/1:2783:5636:-9070.38,-85.1677,-9164.25:99:99859:100902:2830 0/1:4465:9243:-14530.5,-136.235,-15431.6:99:159979:169991:4738 0/0:82:10252:-422.854,-3035.18,-32956.8:99:2854:364343:10133 0/0:56:6869:-225.818,-1971.34,-21857.7:99:1987:242341:6801 0/0:50:8327:-252.734,-2463.65,-26637.7:99:1743:294909:8252 0/0:52:5939:-226.202,-1720.06,-19063.4:99:1804:211107:5875
chr22 42524768 . C T 9.39 . AB=0.5;ABP=3.0103;AC=1;AF=0.0714286;AN=14;AO=48;BVAR;CIGAR=1X;DP=22984;DPRA=0;EPP=4.6389;EPPR=12109.5;HWE=-19.2686;LEN=1;MEANALT=2.85714;MQM=253.438;MQMR=252.043;NS=7;NUMALT=1;ODDS=2.04022;PAIRED=0;PAIREDR=0;RO=22899;RPP=4.6389;RPPR=12109.5;RUN=1;SAP=107.241;SRP=49727.6;TYPE=snp;XAI=0.00658074;XAM=0.011627;XAS=0.00504627;XRI=0.00777981;XRM=0.0128159;XRS=0.00503609 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:2:-4,-0.30103,-3:9.39:40:30:1 0/0:5:2707:-42.3636,-823.672,-8680.23:99:186:96163:2696 0/0:9:4474:-55.3973,-1344.94,-14360.1:99:314:159256:4459 0/0:9:5096:-63.0267,-1538.26,-16316.2:99:315:180906:5078 0/0:11:3576:-57.7558,-1071.53,-11541.7:99:321:127920:3557 0/0:10:4173:-34.3636,-1229.56,-13526.9:99:345:150262:4162 0/0:3:2956:-38.402,-907.913,-9597.42:99:96:106308:2946
chr22 42524941 . GG G 25077.30 . AB=0.0745004;ABP=26367.3;AC=7;AF=0.5;AN=14;AO=1249;BVAR;CIGAR=1M1D;DP=16765;DPRA=0;EPP=962.785;EPPR=31681.6;HWE=32.3452;LEN=1;MEANALT=8.42857;MQM=245.153;MQMR=251.042;NS=7;NUMALT=1;ODDS=8.36779;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=15343;RPP=962.785;RPPR=31681.6;RUN=1;SAP=2715.18;SRP=33319.9;TYPE=del;XAI=0.0177436;XAM=0.026387;XAS=0.00864343;XRI=0.00476137;XRM=0.00965079;XRS=0.00488941 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:2:-4.4,-0.30103,-3.4:35.93:44:34:1 0/1:162:1980:-789.072,-407.337,-4927.8:99:8127:54115:1802 0/1:252:3294:-1233.86,-694.824,-8215.23:99:12662:90235:3019 0/1:247:3745:-1198.37,-859.64,-9444.54:99:11803:103429:3461 0/1:212:2587:-1067.72,-554.274,-6371.85:99:10762:69699:2350 0/1:210:2960:-1100.29,-708.337,-7399.29:99:10498:80489:2711 0/1:165:2197:-863.764,-521.361,-5495.43:99:8244:59709:1999
chr22 42524947 rs3892097 C T 49314.70 . AB=0.459977;ABP=86.6172;AC=2;AF=0.142857;AN=14;AO=2801;BVAR;CIGAR=1X;DB;DP=19689;DPRA=1640.58;EPP=5175.39;EPPR=33587.5;HWE=-23.8382;LEN=1;MEANALT=7.33333;MQM=250.725;MQMR=250.786;NS=7;NUMALT=1;ODDS=2.3979;PAIRED=0;PAIREDR=0;REPEAT=C:2;RO=16272;RPP=5175.39;RPPR=33587.5;RUN=1;SAP=6085.3;SRP=35337.2;TYPE=snp;XAI=0.00513308;XAM=0.0107355;XAS=0.00560246;XRI=0.00544547;XRM=0.00976638;XRS=0.00432091 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:2:0,-0.60206,-5.7:10.79:0:60:2 0/1:1042:2266:-3413.15,-180.985,-3855.5:99:35951:40866:1171 0/1:1722:3743:-5696.27,-300.909,-6320.87:99:59999:66939:1933 0/0:15:4456:-616.418,-1812.95,-13863.7:99:567:147759:4270 0/0:6:3084:-344.528,-1204.8,-9568.25:99:229:102715:2980 0/0:9:3539:-390.067,-1370.7,-11013.5:99:285:118323:3421 0/0:7:2599:-352.186,-1063.05,-8149.13:99:247:86880:2495
chr22 42524965 . GG G 49314.70 . AB=0.409009;ABP=523.446;AC=7;AF=0.5;AN=14;AO=2960;BVAR;CIGAR=1M1D;DP=7237;DPRA=0;EPP=3067.97;EPPR=5962.58;HWE=32.3452;LEN=1;MEANALT=4;MQM=249.276;MQMR=246.491;NS=7;NUMALT=1;ODDS=9.74934;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=4222;RPP=3067.97;RPPR=5962.58;RUN=1;SAP=6430.57;SRP=9170.97;TYPE=del;XAI=0.0114242;XAM=0.017162;XAS=0.00573776;XRI=0.00639741;XRM=0.0125077;XRS=0.00611032 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:2:-5.2,-0.30103,-4:42.08:52:40:1 0/1:383:871:-1926.73,-26.6572,-1349.14:99:21153:14738:480 0/1:700:1459:-3489.49,-23.6405,-2129.53:99:38531:23423:753 0/1:623:1579:-3189.88,-67.1286,-2671.51:99:34870:29113:940 0/1:463:1132:-2047.35,-32.3165,-1636.38:99:22490:17926:661 0/1:470:1242:-2084.43,-51.1653,-1854.99:99:22776:20229:761 0/1:320:952:-1398.09,-41.047,-1526.4:99:15337:16765:626
chr22 42524972 . GG G 49314.70 . AB=0.248782;ABP=5403.59;AC=7;AF=0.5;AN=14;AO=2451;BVAR;CIGAR=1M1D;DP=9853;DPRA=0;EPP=249.065;EPPR=13651.1;HWE=32.3452;LEN=1;MEANALT=4.83333;MQM=231.95;MQMR=250.585;NS=7;NUMALT=1;ODDS=0.538997;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=7344;RPP=249.065;RPPR=13651.1;RUN=1;SAP=5325.29;SRP=15950.3;TYPE=del;XAI=0.0124679;XAM=0.0193205;XAS=0.00685267;XRI=0.00528277;XRM=0.0110049;XRS=0.00572215 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:0:1:0,-0.30103,-3.4:2:0:34:1 0/1:93:1262:-447.769,-271.9,-2927.89:99:4548:32107:1156 0/1:180:2200:-863.867,-435.612,-5037.49:99:9088:55464:2007 0/1:152:2405:-699.597,-509.92,-5662.27:99:7398:62541:2242 0/1:711:1345:-3198.01,-31.2898,-1507.04:99:35216:16430:625 0/1:767:1511:-3425.8,-30.8078,-1748.96:99:37741:19112:735 0/1:548:1129:-2435.35,-13.2774,-1370.6:99:26931:15103:578
chr22 42524983 . CC C 49314.70 . AB=0.457204;ABP=129.209;AC=7;AF=0.5;AN=14;AO=3627;BVAR;CIGAR=1M1D;DP=7933;DPRA=0;EPP=368.192;EPPR=8636.77;HWE=32.3452;LEN=1;MEANALT=4.42857;MQM=228.596;MQMR=252.293;NS=7;NUMALT=1;ODDS=8.36779;PAIRED=0;PAIREDR=0;REPEAT=C:4;RO=4232;RPP=368.192;RPPR=8636.77;RUN=1;SAP=7878.94;SRP=9192.68;TYPE=del;XAI=0.0125058;XAM=0.0192024;XAS=0.00669657;XRI=0.00343157;XRM=0.00866831;XRS=0.00523675 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:2:-3.6,-0.30103,-3.4:34.22:36:34:1 0/1:592:1016:-2554.77,-17.7863,-1068.94:99:28275:11768:421 0/1:987:1711:-4513.09,-108.396,-1847.26:99:49080:19462:697 0/1:965:1755:-4358.03,-34.5396,-1994.41:99:48103:21843:782 0/1:350:1154:-1608.42,-104.502,-1957.59:99:17136:21018:783 0/1:457:1311:-2034.13,-45.2527,-2074.14:99:22402:22849:848 0/1:275:984:-1246.18,-75.8657,-1722.42:99:13482:18776:700
chr22 42524990 . CC C 49314.70 . AB=0.342402;ABP=2548.44;AC=7;AF=0.5;AN=14;AO=4040;BVAR;CIGAR=1M1D;DP=11799;DPRA=0;EPP=894.681;EPPR=14976.8;HWE=32.3452;LEN=1;MEANALT=4.28571;MQM=205.035;MQMR=245.649;NS=7;NUMALT=1;ODDS=6.98623;PAIRED=0;PAIREDR=0;REPEAT=C:5;RO=7652;RPP=894.681;RPPR=14976.8;RUN=1;SAP=8775.76;SRP=16619.1;TYPE=del;XAI=0.0104144;XAM=0.0171794;XAS=0.00676494;XRI=0.00371427;XRM=0.00906809;XRS=0.00535382 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:2:-4.2,-0.30103,-2.8:30.18:42:28:1 0/1:356:1306:-1858.53,-94.4901,-2177.71:99:20279:23829:942 0/1:659:2272:-3557.47,-162.827,-3729.23:99:38701:40613:1594 0/1:680:2478:-3640.62,-190.585,-4130.36:99:39570:45015:1774 0/1:816:1964:-3921.64,-88.6211,-2664.17:99:42725:28756:1124 0/1:889:2161:-4483.71,-112.344,-2951.72:99:48730:31711:1242 0/1:639:1616:-3069.62,-23.5481,-2266.1:99:34032:25107:975
chr22 42525126 . G T 71.67 . AB=0.375;ABP=4.09604;AC=1;AF=0.0714286;AN=14;AO=18;BVAR;CIGAR=1X;DP=32571;DPRA=0.895662;EPP=3.49285;EPPR=16183.4;HWE=-19.2686;LEN=1;MEANALT=2.66667;MQM=234.889;MQMR=229.973;NS=7;NUMALT=1;ODDS=16.5027;PAIRED=0;PAIREDR=0;REPEAT=G:2;RO=32476;RPP=3.49285;RPPR=16183.4;RUN=1;SAP=42.0968;SRP=70523.7;TYPE=snp;XAI=0.00437732;XAM=0.00953285;XAS=0.00515554;XRI=0.00609047;XRM=0.0119027;XRS=0.00581226 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:3:8:-10.64,-0.660052,-15.824:71.67:114:172:5 0/0:4:3956:-64.5894,-1226.79,-12369.2:99:131:136850:3939 0/0:5:6783:-88.6261,-2091.93,-21323.6:99:179:236124:6760 0/0:2:7069:-60.1667,-2169.45,-22145.2:99:62:245451:7048 0/0:0:5110:-50.6364,-1585.59,-16021:99:0:177450:5099 0/0:3:5549:-34.3636,-1684.29,-17477.9:99:85:193902:5538 0/0:1:4096:-24.0533,-1248.44,-12907.5:99:29:143178:4087
chr22 42525132 rs1058164 G C 49314.70 . AB=0.487091;ABP=41.8074;AC=5;AF=0.357143;AN=14;AO=13090;BVAR;CIGAR=1X;DB;DP=33870;DPRA=806.262;EPP=1840.32;EPPR=15069.3;HWE=3.0103;LEN=1;MEANALT=6.5;MQM=233.472;MQMR=228.746;NS=7;NUMALT=1;ODDS=4.62889;PAIRED=0;PAIREDR=0;REPEAT=GA:2;RO=20537;RPP=1840.32;RPPR=15069.3;RUN=1;SAP=28427.6;SRP=44598.5;TYPE=snp;XAI=0.00622685;XAM=0.0105876;XAS=0.00436075;XRI=0.00634881;XRM=0.0110669;XRS=0.00471811 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:7:0,-2.10721,-24.8686:20.15:0:272:7 0/1:1988:4087:-6800.06,-78.6066,-7037.56:99:74709:77348:2078 0/0:35:7061:-255.628,-2169.12,-23671.3:99:1179:261353:6988 0/1:3607:7400:-12447,-269.269,-12728.1:99:135335:138458:3717 0/1:2551:5311:-8742.43,-137.585,-9199.27:99:95644:100720:2719 0/1:2832:5766:-9721.01,-161.356,-9853.75:99:106242:107717:2890 0/1:2077:4238:-7104.8,-95.6117,-7267.15:99:77904:79708:2138
chr22 42525194 . G GG 49314.70 . AB=0.863495;ABP=11411.8;AC=8;AF=0.571429;AN=14;AO=8587;BVAR;CIGAR=1M1I;DP=9944;DPRA=0;EPP=18649.4;EPPR=82.0485;HWE=27.36;LEN=1;MEANALT=4.85714;MQM=253.157;MQMR=253.974;NS=7;NUMALT=1;ODDS=0.847298;PAIRED=0;PAIREDR=0;REPEAT=G:5;RO=1034;RPP=18649.4;RPPR=82.0485;RUN=1;SAP=18649.4;SRP=2248.31;TYPE=ins;XAI=0.0092712;XAM=0.0142014;XAS=0.00493025;XRI=0.00279276;XRM=0.0107418;XRS=0.00794905 GT:AO:DP:GL:GQ:QA:QR:RO 1/1:3:3:-16.0533,-0.90309,0:5.31:172:0:0 0/1:1087:1275:-5423.85,-276.401,-417.487:99:59100:3477:156 0/1:1637:1906:-8061.83,-443.67,-605.14:99:87654:4805:214 0/1:1866:2171:-9310.22,-512.347,-679.838:99:101230:5340:237 0/1:1401:1605:-6584.55,-391.911,-449.165:99:71576:3408:157 0/1:1485:1715:-7072.26,-463.319,-513.698:99:76401:3531:162 0/1:1108:1269:-5272.61,-370.296,-371.776:17.40:56792:2341:108
chr22 42525197 . GG G 23022.80 . AB=0.0995978;ABP=7273.45;AC=7;AF=0.5;AN=14;AO=520;BVAR;CIGAR=1M1D;DP=5221;DPRA=0;EPP=1123.51;EPPR=506.409;HWE=32.3452;LEN=1;MEANALT=6.28571;MQM=253.763;MQMR=253.784;NS=7;NUMALT=1;ODDS=7.44675;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=4305;RPP=1123.51;RPPR=506.409;RUN=1;SAP=1132.18;SRP=9351.2;TYPE=del;XAI=0.00898714;XAM=0.0170326;XAS=0.00804546;XRI=0.00641878;XRM=0.0121688;XRS=0.00575 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:2:-11.5,-0.30103,-3:32.34:115:30:1 0/1:68:683:-499.55,-202.114,-1604:99:4460:16735:589 0/1:98:1030:-709.779,-296.215,-2354.59:99:6383:24662:894 0/1:103:1198:-859.906,-409.441,-2788.84:99:7157:28593:1035 0/1:83:800:-844.135,-467.496,-1880.93:99:5357:16880:634 0/1:88:862:-991.805,-602.17,-2107.47:99:5538:17937:660 0/1:79:646:-762.49,-395.481,-1494.56:99:4894:13031:492
chr22 42525244 . CC C 153.81 . AB=0.5;ABP=3.0103;AC=1;AF=0.0714286;AN=14;AO=179;BVAR;CIGAR=1M1D;DP=20257;DPRA=0;EPP=391.704;EPPR=1121.61;HWE=-19.2686;LEN=1;MEANALT=5.57143;MQM=253.782;MQMR=253.794;NS=7;NUMALT=1;ODDS=16.1969;PAIRED=0;PAIREDR=0;REPEAT=C:2|CCA:2|CCAC:2;RO=19606;RPP=391.704;RPPR=1121.61;RUN=1;SAP=391.704;SRP=42576.9;TYPE=del;XAI=0.0132774;XAM=0.0192844;XAS=0.00600703;XRI=0.00689978;XRM=0.0118897;XRS=0.00498992 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:4:-18.62,-0.425969,-6.08:70.34:196:64:2 0/0:33:2579:-381.966,-880.279,-7151.71:99:2052:77273:2486 0/0:32:4017:-512.034,-1426.44,-11127.4:99:2097:120047:3897 0/0:42:4557:-591.113,-1603.57,-12641.2:99:2504:136395:4409 0/0:17:3107:-360.426,-1135.37,-8798.72:99:1028:94788:3013 0/0:32:3516:-468.911,-1238.37,-9725.8:99:2076:104932:3403 0/0:21:2477:-304.257,-871.498,-6895.93:99:1211:74453:2396
chr22 42525351 . G GG 49314.70 . AB=0.588484;ABP=2284.88;AC=7;AF=0.5;AN=14;AO=19746;BVAR;CIGAR=1M1I;DP=33554;DPRA=0;EPP=41451.2;EPPR=22703.2;HWE=32.3452;LEN=1;MEANALT=8;MQM=253.763;MQMR=248.291;NS=7;NUMALT=1;ODDS=11.3493;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=13144;RPP=41451.2;RPPR=22703.2;RUN=1;SAP=42880.9;SRP=28544.8;TYPE=ins;XAI=0.00982964;XAM=0.0136368;XAS=0.0038072;XRI=0.010348;XRM=0.0161958;XRS=0.00584775 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:5:-5.2,-0.80618,-12.025:49.29:52:130:4 0/1:2516:4182:-15949.2,-392.482,-4630.18:99:173405:47642:1569 0/1:3837:6538:-24192.4,-574.402,-7482.46:99:263069:77407:2552 0/1:4424:7449:-28060.3,-716.247,-8340.79:99:304686:85584:2837 0/1:2879:5115:-17814.3,-247.123,-6080.07:99:195452:65076:2167 0/1:3573:5958:-22160.7,-363.78,-6474.9:99:242883:68601:2295 0/1:2516:4307:-15530.5,-272.73,-4852.56:99:169912:51272:1720
chr22 42525356 . G GG 49314.70 . AB=0.316695;ABP=9860.92;AC=7;AF=0.5;AN=14;AO=10697;BVAR;CIGAR=1M1I;DP=33777;DPRA=0;EPP=22260.1;EPPR=16696.5;HWE=32.3452;LEN=1;MEANALT=9.71429;MQM=253.687;MQMR=252.72;NS=7;NUMALT=1;ODDS=10.198;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=18797;RPP=22260.1;RPPR=16696.5;RUN=1;SAP=23231.3;SRP=40820.2;TYPE=ins;XAI=0.00761128;XAM=0.0112169;XAS=0.00360561;XRI=0.00693026;XRM=0.0120364;XRS=0.00510618 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:5:-4.7,-0.80618,-13.32:6.28:47:144:4 0/1:1258:4190:-10402.8,-1922.99,-9230.48:6.28:95213:82191:2475 0/1:1858:6509:-15568.3,-3332.16,-14772.9:6.28:137748:128913:3890 0/1:2062:7346:-17115.4,-3538.89,-16645.9:6.28:153089:147876:4487 0/1:1769:5239:-14851.8,-3104.4,-11022.8:6.28:131047:88506:2732 0/1:2204:6072:-18102.8,-3606.38,-12202:6.28:161381:95820:2993 0/1:1545:4416:-12911.6,-2748.55,-9095.39:6.28:113232:70833:2216
chr22 42525418 . G T 27.33 . AB=0.333333;ABP=4.45795;AC=1;AF=0.0714286;AN=14;AO=2;BVAR;CIGAR=1X;DP=35864;DPRA=0.00100396;EPP=7.35324;EPPR=34354.7;HWE=-19.2686;LEN=1;MEANALT=1;MQM=254;MQMR=248.729;NS=7;NUMALT=1;ODDS=6.29066;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=35629;RPP=7.35324;RPPR=34354.7;RUN=1;SAP=7.35324;SRP=77370.4;TYPE=snp;XAI=0.00842813;XAM=0.00842813;XAS=0;XRI=0.0109442;XRM=0.0155782;XRS=0.00463398 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:6:-6.175,-0.630089,-12.6725:27.33:65:137:4 0/0:0:4534:-117.913,-1472.25,-13442.5:99:0:148051:4499 0/0:0:7098:-149.107,-2271.07,-20971.9:99:0:231364:7049 0/0:0:8205:-194.225,-2646.42,-24164:99:0:266331:8146 0/0:0:5399:-73.4048,-1691.14,-15685.3:99:0:173465:5374 0/0:0:6127:-101.22,-1935.4,-17920:99:0:197986:6093 0/0:0:4495:-104.232,-1448.03,-13071.5:99:0:144081:4464
chr22 42525455 . C CC 49314.70 . AB=0.303027;ABP=14051.1;AC=7;AF=0.5;AN=14;AO=12632;BVAR;CIGAR=1M1I;DP=41686;DPRA=0;EPP=60.4402;EPPR=25491.5;HWE=32.3452;LEN=1;MEANALT=6.57143;MQM=220.658;MQMR=251.903;NS=7;NUMALT=1;ODDS=13.8318;PAIRED=0;PAIREDR=0;RO=28765;RPP=60.4402;RPPR=25491.5;RUN=1;SAP=27433;SRP=62465.4;TYPE=ins;XAI=0.0337375;XAM=0.0412115;XAS=0.00747399;XRI=0.00638066;XRM=0.0110039;XRS=0.00462327 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:6:-6.5,-1.02803,-13.892:60.07:65:151:5 0/1:1526:5167:-6537.71,-291.174,-9677.37:99:71521:106408:3607 0/1:2452:8071:-10548.4,-426.099,-14883.7:99:115490:163662:5568 0/1:2732:9314:-11599.2,-503.697,-17346.3:99:127172:191030:6528 0/1:2002:6478:-8624.62,-378.143,-12082.3:99:93895:132315:4417 0/1:2193:7280:-9330.85,-386.967,-13855.8:99:102177:152456:5041 0/1:1726:5370:-7396.03,-270.528,-9907.23:99:80816:108720:3599
chr22 42525461 . CC C 49314.70 . AB=0.590029;ABP=1697.57;AC=7;AF=0.5;AN=14;AO=14202;BVAR;CIGAR=1M1D;DP=24070;DPRA=0;EPP=12737;EPPR=18860.8;HWE=32.3452;LEN=1;MEANALT=9;MQM=249.671;MQMR=245.185;NS=7;NUMALT=1;ODDS=12.4686;PAIRED=0;PAIREDR=0;REPEAT=C:4;RO=9294;RPP=12737;RPPR=18860.8;RUN=1;SAP=30842.3;SRP=20184.7;TYPE=del;XAI=0.00975033;XAM=0.0149798;XAS=0.00522945;XRI=0.00927598;XRM=0.0149942;XRS=0.00571821 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:4:6:-12.21,-0.630089,-5.51:54.15:132:58:2 0/1:1784:2943:-6254.75,-239.493,-2852.64:99:67259:29459:1094 0/1:2918:4626:-10171.3,-422.209,-4202.37:99:109290:42970:1597 0/1:3307:5389:-11480.7,-460.866,-5148.36:99:123314:52956:1953 0/1:2104:3800:-7395.13,-302.479,-4342.42:99:78991:45073:1604 0/1:2332:4167:-8242.31,-288.009,-4692.07:99:88607:49161:1744 0/1:1753:3139:-6170.68,-271.514,-3523.69:99:65729:36319:1300
chr22 42525468 . CC C 49314.70 . AB=0.574154;ABP=1687.65;AC=6;AF=0.428571;AN=14;AO=20251;BVAR;CIGAR=1M1D;DP=35275;DPRA=1469.62;EPP=1750.54;EPPR=24792.3;HWE=27.36;LEN=1;MEANALT=11.6667;MQM=233.651;MQMR=239.818;NS=7;NUMALT=1;ODDS=1.54045;PAIRED=0;PAIREDR=0;REPEAT=C:6;RO=13843;RPP=1750.54;RPPR=24792.3;RUN=1;SAP=43977.5;SRP=30062.7;TYPE=del;XAI=0.0194357;XAM=0.0253129;XAS=0.00587726;XRI=0.00584761;XRM=0.0108135;XRS=0.00496586 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:4:0,-1.20412,-8.7875:7.53:0:95:4 0/1:2644:4322:-16992,-578.903,-3676.11:99:183120:35171:1524 0/1:4284:6792:-27286.1,-852.482,-5464.5:99:295199:52742:2295 0/1:4712:7677:-30189.5,-1044.24,-6528.03:99:325194:62294:2697 0/1:3000:5663:-17762.1,-627.734,-5829.72:99:190515:57937:2492 0/1:3217:6240:-19133.5,-720.36,-6612.18:99:204674:65553:2815 0/1:2394:4577:-14310.3,-591.74,-4767.45:99:152525:46498:2016
chr22 42525513 . C CC 49314.70 . AB=0.206594;ABP=33771.8;AC=7;AF=0.5;AN=14;AO=9330;BVAR;CIGAR=1M1I;DP=45161;DPRA=0;EPP=19813.7;EPPR=39132.6;HWE=32.3452;LEN=1;MEANALT=8.28571;MQM=253.79;MQMR=250.76;NS=7;NUMALT=1;ODDS=11.4556;PAIRED=0;PAIREDR=0;REPEAT=C:3;RO=34562;RPP=19813.7;RPPR=39132.6;RUN=1;SAP=20262.8;SRP=75053.4;TYPE=ins;XAI=0.00498178;XAM=0.00975723;XAS=0.00477545;XRI=0.0111556;XRM=0.0157294;XRS=0.00457385 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:5:7:-33.488,-0.784991,-5.225:6.28:364:55:2 0/1:1019:5513:-6646.33,-932.564,-14052.7:6.28:68896:151192:4360 0/1:1786:8782:-11738.2,-1430.59,-21691.5:6.28:121997:232593:6762 0/1:2247:10322:-14711.8,-1577.06,-25082.4:6.28:153813:269045:7807 0/1:1519:6915:-9834.47,-1219.77,-16960.6:6.28:100808:179990:5165 0/1:1573:7892:-10272,-1378.68,-19860.1:6.28:105682:212220:6085 0/1:1181:5730:-7541.27,-953.425,-14253.5:6.28:77943:152526:4381
chr22 42525772 rs28371706 G A 49314.70 . AB=0.516246;ABP=41.4639;AC=4;AF=0.285714;AN=14;AO=8718;BVAR;CIGAR=1X;DB;DP=36411;DPRA=0;EPP=2256.69;EPPR=45790.1;HWE=-12.5527;LEN=1;MEANALT=4.28571;MQM=251.436;MQMR=251.588;NS=7;NUMALT=1;ODDS=15.538;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=27536;RPP=2256.69;RPPR=45790.1;RUN=1;SAP=18933.9;SRP=59796.7;TYPE=snp;XAI=0.00870035;XAM=0.0128199;XAS=0.00411958;XRI=0.00766392;XRM=0.0131876;XRS=0.00552367 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:6:-7.6,-0.630089,-14.43:67.48:80:156:4 0/0:9:4222:-73.2857,-1284.7,-13665.8:99:321:151349:4201 0/0:17:6820:-101.457,-2040.96,-22054:99:659:244576:6791 0/0:33:8596:-171.035,-2549.59,-27809.4:99:1242:308335:8548 0/1:3038:5809:-10619.1,-158.772,-8947.62:99:116288:97716:2731 0/1:3210:6294:-11281,-235.273,-9915.3:99:122766:107592:3027 0/1:2409:4664:-8395.13,-88.5019,-7227.63:99:92334:79362:2234
chr22 42525798 rs28371705 G C 49314.70 . AB=0.446311;ABP=296.568;AC=2;AF=0.142857;AN=14;AO=5266;BVAR;CIGAR=1X;DB;DP=39879;DPRA=738.333;EPP=1884.39;EPPR=51306.4;HWE=-23.8382;LEN=1;MEANALT=4.66667;MQM=251.771;MQMR=250.474;NS=7;NUMALT=1;ODDS=7.24993;PAIRED=0;PAIREDR=0;REPEAT=G:2;RO=34418;RPP=1884.39;RPPR=51306.4;RUN=1;SAP=11438;SRP=74740.7;TYPE=snp;XAI=0.00757556;XAM=0.0158367;XAS=0.00826114;XRI=0.00839166;XRM=0.0134937;XRS=0.00510199 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:9:0,-2.70927,-28.8822:31.49:0:317:9 0/1:1961:4417:-6769.73,-120.861,-8215.57:99:74021:90086:2432 0/1:3272:7308:-11308.3,-195.997,-13409:99:123671:147012:4000 0/0:11:9637:-212.259,-3028.36,-31964.7:99:381:353186:9578 0/0:5:6374:-91.6356,-1970.01,-21167.2:99:187:234360:6347 0/0:15:7001:-199.858,-2200.75,-23225.4:99:552:256392:6948 0/0:2:5133:-106.878,-1630.07,-17088:99:75:188754:5104
chr22 42525811 rs28371704 T C 49314.70 . AB=0.440145;ABP=372.917;AC=2;AF=0.142857;AN=14;AO=5326;BVAR;CIGAR=1X;DB;DP=40392;DPRA=841.333;EPP=1863.19;EPPR=52237.8;HWE=-23.8382;LEN=1;MEANALT=7.16667;MQM=251.788;MQMR=250.169;NS=7;NUMALT=1;ODDS=6.55678;PAIRED=0;PAIREDR=0;RO=34870;RPP=1863.19;RPPR=52237.8;RUN=1;SAP=11568.3;SRP=75722.3;TYPE=snp;XAI=0.00761474;XAM=0.0158167;XAS=0.00820192;XRI=0.00847482;XRM=0.0135879;XRS=0.00511305 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:8:0,-2.40824,-26.4625:28.48:0:290:8 0/1:1973:4496:-6820.94,-115.824,-8393.5:99:74671:92144:2496 0/1:3259:7391:-11248.9,-123.311,-13641.8:99:123876:150464:4105 0/0:30:9809:-271.927,-3028.9,-32493.9:99:1053:359075:9733 0/0:21:6418:-241.662,-2036.63,-21336.4:99:731:235118:6360 0/0:23:7070:-258.172,-2235.46,-23416.9:99:831:258152:7013 0/0:20:5200:-197.045,-1631.41,-17259.1:99:752:190332:5155
chr22 42525821 rs28371703 G T 49314.70 . AB=0.430211;ABP=526.447;AC=2;AF=0.142857;AN=14;AO=5356;BVAR;CIGAR=1X;DB;DP=42468;DPRA=884.583;EPP=2234.37;EPPR=48344.8;HWE=-23.8382;LEN=1;MEANALT=6.33333;MQM=251.326;MQMR=249.903;NS=7;NUMALT=1;ODDS=6.55678;PAIRED=0;PAIREDR=0;REPEAT=GC:2;RO=36935;RPP=2234.37;RPPR=48344.8;RUN=1;SAP=11633.4;SRP=80206.3;TYPE=snp;XAI=0.00792717;XAM=0.016185;XAS=0.00825781;XRI=0.00875497;XRM=0.0139492;XRS=0.00519421 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:8:0,-2.40824,-27.1925:28.48:0:298:8 0/1:2008:4675:-7094.28,-156.785,-8956.45:99:77309:98000:2633 0/1:3315:7698:-11730.4,-266.493,-14636.9:99:127723:160017:4324 0/0:7:10310:-130.114,-3178.2,-34503.4:99:256:382182:10276 0/0:8:6795:-149.049,-2133.74,-22875.6:99:293:252811:6759 0/0:15:7482:-114.015,-2267.07,-25044.6:99:546:277553:7453 0/0:3:5500:-74.3461,-1705.36,-18521.6:99:108:205078:5482
chr22 42525889 . AC A 819.44 . AB=0.0376186;ABP=5679.9;AC=2;AF=0.142857;AN=14;AO=605;BVAR;CIGAR=1M1D;DP=18424;DPRA=0;EPP=19.1223;EPPR=7660.07;HWE=-23.8382;LEN=1;MEANALT=6.28571;MQM=208.195;MQMR=236.841;NS=7;NUMALT=1;ODDS=5.51672;PAIRED=0;PAIREDR=0;REPEAT=AC:2;RO=17360;RPP=19.1223;RPPR=7660.07;RUN=1;SAP=1316.75;SRP=37699.8;TYPE=del;XAI=0.0134462;XAM=0.0212868;XAS=0.0078406;XRI=0.0108217;XRM=0.017876;XRS=0.00705427 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:3:-3.6,-0.425969,-5.51:9.03:36:58:2 0/0:67:1947:-563.185,-570.786,-5821.18:6.02:4912:63337:1842 0/1:114:3054:-932.397,-850.038,-9079.54:6.02:8633:99160:2889 0/0:159:4641:-1269.7,-1298.89,-13681.2:6.02:11638:149547:4409 0/0:92:2889:-853.721,-932.776,-8559.88:6.02:6544:92170:2707 0/0:91:3485:-974.107,-1222.23,-10417.2:6.02:6458:111383:3263 0/0:81:2405:-755.184,-775.602,-7130.77:6.02:5879:76721:2248
chr22 42525895 . CC C 49314.70 . AB=0.135925;ABP=19196.7;AC=7;AF=0.5;AN=14;AO=2266;BVAR;CIGAR=1M1D;DP=16671;DPRA=0;EPP=4590.65;EPPR=18703.8;HWE=32.3452;LEN=1;MEANALT=5.14286;MQM=202.108;MQMR=245.728;NS=7;NUMALT=1;ODDS=0.538997;PAIRED=0;PAIREDR=0;REPEAT=C:4;RO=12758;RPP=4590.65;RPPR=18703.8;RUN=1;SAP=4923.57;SRP=27706.7;TYPE=del;XAI=0.0129141;XAM=0.0205811;XAS=0.00766697;XRI=0.0103281;XRM=0.0171763;XRS=0.00684816 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:1:-4.7,-0.30103,0:0.54:47:0:0 0/1:202:1774:-1357.16,-654.616,-4345.15:6.28:10447:43649:1472 0/1:552:2720:-3004.74,-463.36,-5841.57:6.28:30596:62119:2107 0/1:844:4213:-5314.24,-1316.52,-9394.15:6.28:47841:93176:3142 0/1:224:2600:-3169.27,-2431.07,-7431.74:6.28:12031:59394:1957 0/1:255:3143:-3788.2,-2939.85,-8953.36:6.28:14226:71619:2384 0/1:188:2220:-2580.22,-1959.87,-6230.95:6.28:10260:50826:1696
chr22 42525920 . GG G,GGG 11254.60 . AB=0.0450071,0.0479375;ABP=23934.5,23627.2;AC=4,4;AF=0.285714,0.285714;AN=14;AO=599,638;BVAR;CIGAR=1M1D,2M1I;DP=13309;DPRA=0,0;EPP=92.3669,1269.48;EPPR=14554.2;HWE=2.9073;LEN=1,1;MEANALT=6.71429,6.71429;MQM=189.593,207.154;MQMR=245.266;NS=7;NUMALT=2;ODDS=1.61181;PAIRED=0,0;PAIREDR=0;REPEAT=G:3;RO=11733;RPP=92.3669,1269.48;RPPR=14554.2;RUN=1,1;SAP=1303.72,1388.41;SRP=25480.9;TYPE=del,ins;XAI=0.0141233,0.0209738;XAM=0.022054,0.0293882;XAS=0.00793068,0.00841438;XRI=0.0104127;XRM=0.0172046;XRS=0.00679193 GT:AO:DP:GL:GQ:QA:QR:RO 1/2:1,1:3:-11.21,-3.80103,-5.985,-8.60103,-3.10103,-10.545:10.21:83,35:28:1 0/2:47,68:1432:-652.064,-708.716,-4005.95,-650.983,-3717.83,-3970.49:6.99:2829,3223:40096:1276 0/2:87,133:2243:-1334.67,-1324.02,-6344.52,-1077.29,-5676.29,-6142.55:6.99:5218,7462:60885:1952 0/2:140,195:3367:-1974.83,-1917.73,-9498.3,-1644.83,-8547.97,-9278.52:6.99:8154,10596:91750:2924 0/1:102,82:2017:-994.654,-839.194,-5505.44,-1065.72,-5156.13,-5711.64:6.99:6191,3900:56313:1802 0/1:124,90:2501:-1182.75,-1002.49,-6837.8,-1335.9,-6454.67,-7135.71:6.99:7594,4284:70430:2245 0/1:98,69:1746:-945.673,-744.834,-4703.36,-1022.74,-4422.69,-4952.58:6.99:5913,3144:47667:1533
chr22 42525925 . G GG 49314.70 . AB=0.125029;ABP=21130.9;AC=7;AF=0.5;AN=14;AO=2163;BVAR;CIGAR=1M1I;DP=17300;DPRA=0;EPP=4226.09;EPPR=14555.3;HWE=32.3452;LEN=1;MEANALT=4.71429;MQM=184.983;MQMR=241.036;NS=7;NUMALT=1;ODDS=15.3448;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=14889;RPP=4226.09;RPPR=14555.3;RUN=1;SAP=4699.91;SRP=32334.1;TYPE=ins;XAI=0.012058;XAM=0.0201676;XAS=0.00810955;XRI=0.0108463;XRM=0.017858;XRS=0.0070117 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:3:-8.2,-0.425969,-6.555:66.54:82:69:2 0/1:235:1855:-1384.41,-347.029,-4906.96:99:14247:53389:1584 0/1:323:2823:-2043.91,-496.799,-7552.33:99:21711:82919:2467 0/1:617:4361:-4020.57,-788.71,-11318.7:99:41692:122786:3651 0/1:303:2702:-1788.36,-467.809,-7325.98:99:19077:80609:2373 0/1:407:3296:-2448.35,-536.234,-8810.71:99:26256:96952:2858 0/1:277:2260:-1696.85,-395.458,-6067.06:99:17898:66459:1954
chr22 42525931 . G GG 49314.70 . AB=0.183216;ABP=16154.6;AC=7;AF=0.5;AN=14;AO=3395;BVAR;CIGAR=1M1I;DP=18530;DPRA=0;EPP=6491.35;EPPR=17237.7;HWE=32.3452;LEN=1;MEANALT=6;MQM=199.949;MQMR=239.883;NS=7;NUMALT=1;ODDS=9.21988;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=14775;RPP=6491.35;RPPR=17237.7;RUN=1;SAP=7375.16;SRP=32086.5;TYPE=ins;XAI=0.00999677;XAM=0.0177495;XAS=0.00775271;XRI=0.0111993;XRM=0.0182877;XRS=0.00708839 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:4:-13.11,-0.425969,-3.895:40.04:138:41:2 0/1:304:1974:-1940.75,-342.758,-5039.89:99:20177:54615:1629 0/1:434:3037:-3006.95,-537.385,-7861.84:99:31456:85403:2547 0/1:935:4676:-6306.35,-655.15,-11271.8:99:66946:122121:3647 0/1:542:2905:-3641.09,-409.873,-7071.81:99:38774:76897:2314 0/1:696:3533:-4640.63,-481.783,-8367.9:99:49437:90855:2773 0/1:482:2401:-3173.52,-354.922,-5734.41:99:33428:61886:1863
chr22 42525952 . C A,CA 49314.70 . AB=0.559845,0.118057;ABP=364.797,14739.4;AC=6,2;AF=0.428571,0.142857;AN=14;AO=6525,1375;BVAR;CIGAR=1X,1M1I;DP=13198;DPRA=0,0;EPP=1707.3,9.68264;EPPR=8724.46;HWE=2.1114;LEN=1,1;MEANALT=5.71429,5.71429;MQM=228.39,217.375;MQMR=244.33;NS=7;NUMALT=2;ODDS=9.2056;PAIRED=0,0;PAIREDR=0;REPEAT=C:6;RO=5225;RPP=1707.3,9.68264;RPPR=8724.46;RUN=1,1;SAP=14171.9,2988.78;SRP=11349;TYPE=snp,ins;XAI=0.00893313,0.0259017;XAM=0.0149697,0.032822;XAS=0.00603657,0.0069203;XRI=0.00879609;XRM=0.0151688;XRS=0.00637271 GT:AO:DP:GL:GQ:QA:QR:RO 1/2:2,1:3:-8.4,-5.20206,-4.6,-4.48103,-0.425969,-4.18:7.90:44,46:0:0 1/2:1065,204:1709:-4378.88,-1108.34,-1964.86,-3376.43,-1083.24,-4275.14:7.90:37026,11356:10204:432 0/0:14,2:1568:-96.0366,-487.01,-3272.27,-546.466,-3267.63,-3307.73:9.54:476,82:35769:1539 0/1:1894,382:3384:-8010.84,-2099.46,-4319.51,-6135.19,-2606.54,-8329.54:7.90:66250,21694:25236:1079 0/1:1095,256:2114:-4809.18,-1371.96,-2939.63,-3550.8,-1747.69,-5077.38:7.90:38367,14614:17595:752 0/1:1440,327:2608:-6311.56,-1798.25,-3524.29,-4621.83,-1948.83,-6333.43:7.90:50561,19348:19592:836 0/1:1015,203:1812:-4317.96,-1117.12,-2321.42,-3289.9,-1379.36,-4477.45:7.90:35865,11909:13682:587
chr22 42525991 . C CC 49314.70 . AB=0.224727;ABP=8909.47;AC=8;AF=0.571429;AN=14;AO=3043;BVAR;CIGAR=1M1I;DP=13534;DPRA=0;EPP=278.202;EPPR=15321.2;HWE=27.36;LEN=1;MEANALT=6.14286;MQM=223.177;MQMR=241.436;NS=7;NUMALT=1;ODDS=0.154151;PAIRED=0;PAIREDR=0;RO=8270;RPP=278.202;RPPR=15321.2;RUN=1;SAP=6610.8;SRP=17961.1;TYPE=ins;XAI=0.0191029;XAM=0.0270395;XAS=0.00793664;XRI=0.00558292;XRM=0.0126992;XRS=0.00711625 GT:AO:DP:GL:GQ:QA:QR:RO 1/1:2:2:-4.845,-0.60206,0:11.46:51:0:0 0/1:316:1462:-1588.27,-786.607,-3107.01:5.74:9623:26498:896 0/1:491:2340:-2244.28,-1032.21,-4912.05:5.74:14867:44509:1544 0/1:799:3406:-3751.51,-1701.39,-6947.49:5.74:24213:59724:2074 0/1:484:2099:-2337.15,-1140.04,-4199.24:5.74:14153:34843:1243 0/1:547:2506:-2787.07,-1429.45,-5057.84:5.74:16200:41431:1491 0/1:404:1719:-1892.64,-888.905,-3379.7:5.74:11839:28362:1022
chr22 42525997 . CC C 49314.70 . AB=0.262036;ABP=5795.57;AC=8;AF=0.571429;AN=14;AO=3090;BVAR;CIGAR=1M1D;DP=11781;DPRA=0;EPP=2691.66;EPPR=13934.4;HWE=27.36;LEN=1;MEANALT=8.42857;MQM=168.911;MQMR=234.45;NS=7;NUMALT=1;ODDS=1.54045;PAIRED=0;PAIREDR=0;REPEAT=C:5;RO=7935;RPP=2691.66;RPPR=13934.4;RUN=1;SAP=6712.86;SRP=17233.6;TYPE=del;XAI=0.0123671;XAM=0.0200087;XAS=0.00764155;XRI=0.00686281;XRM=0.0141274;XRS=0.00726456 GT:AO:DP:GL:GQ:QA:QR:RO 1/1:4:4:-11.655,-1.20412,0:7.53:126:0:0 0/1:379:1386:-1572.69,-296.417,-2421.27:99:14788:24218:937 0/1:683:2238:-2682.66,-344.317,-3663.98:99:26711:37616:1470 0/1:909:3172:-3633.6,-589.787,-5397.66:99:35053:54655:2127 0/1:359:1662:-1780.49,-711.126,-3178.53:99:12928:28463:1138 0/1:449:1979:-2139.05,-727.583,-3657.78:99:16849:33725:1354 0/1:307:1340:-1473.14,-511.355,-2487.33:99:11456:22726:909
chr22 42526049 . C G,CG 49314.70 . AB=0.18002,0.266554;ABP=9982.14,5314.54;AC=9,2;AF=0.642857,0.142857;AN=14;AO=6950,3008;BVAR;CIGAR=1X,1M1I;DP=16504;DPRA=0,2750.5;EPP=6969.62,841.918;EPPR=2089.02;HWE=-16.5861;LEN=1,1;MEANALT=9.71429,11.1667;MQM=218.319,196.558;MQMR=189.054;NS=7;NUMALT=2;ODDS=0.693147;PAIRED=0,0;PAIREDR=0;REPEAT=C:2;RO=6026;RPP=6969.62,841.918;RPPR=2089.02;RUN=1,1;SAP=15094.7,6534.8;SRP=13088.3;TYPE=snp,ins;XAI=0.00683168,0.0140063;XAM=0.01264,0.0201596;XAS=0.00580837,0.00615324;XRI=0.00738358;XRM=0.0131602;XRS=0.00577657 GT:AO:DP:GL:GQ:QA:QR:RO 1/1:1,0:1:-2.1,-0.30103,0,-2.1,-0.30103,-2.1:12.17:21,0:0:0 0/1:739,379:1964:-3925.54,-1881.7,-4060.27,-2216.5,-2344.4,-4363.24:7.27:22734,19367:24231:793 0/2:5,1538:4617:-7387.62,-8263.49,-15896.9,-379.439,-9234.14,-8795.12:7.27:129,79037:94678:2994 0/2:1276,1074:4640:-8821.57,-5278.95,-11544.1,-3955.91,-6598.2,-10189.8:7.27:39968,55016:70219:2186 1/1:1626,4:1741:-4642.14,-673.011,-259.18,-4629.02,-722.725,-4667.16:8.89:49151,174:452:17 1/1:1954,11:2114:-5597.31,-868.435,-391.952,-5555.45,-910.93,-5615.49:8.89:58527,488:690:25 1/1:1349,2:1427:-3833.85,-531.657,-172.596,-3829.12,-566.574,-3850.59:8.89:40941,75:261:11
chr22 42526053 . GG G 49314.70 . AB=0.190012;ABP=12069.6;AC=7;AF=0.5;AN=14;AO=2747;BVAR;CIGAR=1M1D;DP=14457;DPRA=0;EPP=3.58657;EPPR=17743.3;HWE=32.3452;LEN=1;MEANALT=7;MQM=148.241;MQMR=231.765;NS=7;NUMALT=1;ODDS=0.538997;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=10230;RPP=3.58657;RPPR=17743.3;RUN=1;SAP=5968.05;SRP=22217.2;TYPE=del;XAI=0.0110832;XAM=0.0196616;XAS=0.00857839;XRI=0.0106842;XRM=0.0179001;XRS=0.00721585 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:1:-3.5,-0.30103,0:0.35:35:0:0 0/1:327:1655:-1790.03,-716.263,-3369.97:6.37:13095:30651:1138 0/1:312:2550:-2335.42,-1515.67,-5690.08:6.37:12044:49319:1847 0/1:601:3555:-3487.16,-1645.51,-7425.28:5.12:23575:67333:2534 0/1:476:2191:-2205.93,-669.703,-4226.31:5.12:18557:41007:1561 0/1:625:2682:-2853.66,-792.882,-5060.97:5.12:24491:49018:1873 0/1:405:1823:-1955.74,-574.751,-3494.97:5.12:16508:33612:1277
chr22 42526059 . GG G 49314.70 . AB=0.556962;ABP=437.167;AC=8;AF=0.571429;AN=14;AO=8583;BVAR;CIGAR=1M1D;DP=15408;DPRA=0;EPP=7592.29;EPPR=10201.2;HWE=27.36;LEN=1;MEANALT=9.57143;MQM=174.355;MQMR=244.374;NS=7;NUMALT=1;ODDS=0.847298;PAIRED=0;PAIREDR=0;REPEAT=G:5;RO=4788;RPP=7592.29;RPPR=10201.2;RUN=1;SAP=18640.8;SRP=10400;TYPE=del;XAI=0.0146977;XAM=0.0207481;XAS=0.00605041;XRI=0.00555405;XRM=0.0128069;XRS=0.00725289 GT:AO:DP:GL:GQ:QA:QR:RO 1/1:3:3:-10.2667,-0.90309,0:10.79:110:0:0 0/1:926:1735:-4637.34,-608.16,-1894.49:6.02:44968:14494:589 0/1:1596:2892:-8169.84,-1125.39,-3032.99:4.77:78777:21703:892 0/1:2229:3880:-10617.1,-1120.42,-3794.39:4.77:106213:30407:1249 0/1:1309:2340:-6479.44,-969.607,-2417.57:6.02:61741:16611:672 0/1:1501:2703:-7299.97,-1057.87,-2838.32:4.77:69859:20287:823 0/1:1019:1855:-4996.6,-757.585,-1983.77:6.02:47439:13965:563
chr22 42526066 . G GG 49314.70 . AB=0.406965;ABP=1702.02;AC=7;AF=0.5;AN=14;AO=9197;BVAR;CIGAR=1M1I;DP=22599;DPRA=0;EPP=13586.7;EPPR=21120.1;HWE=32.3452;LEN=1;MEANALT=6.71429;MQM=106.782;MQMR=206.993;NS=7;NUMALT=1;ODDS=0.538997;PAIRED=0;PAIREDR=0;REPEAT=G:5;RO=12395;RPP=13586.7;RPPR=21120.1;RUN=1;SAP=19974;SRP=26918.4;TYPE=ins;XAI=0.00729778;XAM=0.013013;XAS=0.0057152;XRI=0.0154455;XRM=0.0223881;XRS=0.00694266 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:1:-5.4,-0.30103,0:2:54:0:0 0/1:1062:2629:-4511.95,-331.05,-3598.37:99:46621:36472:1454 0/1:1902:4451:-8234.8,-649.65,-5899.67:99:84407:58463:2336 0/1:1904:5294:-8052.37,-587.708,-7771.48:99:83778:80659:3213 0/1:1551:3534:-7007.31,-587.516,-4599.89:99:71391:44644:1788 0/1:1680:4019:-7487.01,-585.468,-5392.88:99:76843:53577:2150 0/1:1097:2671:-4968.18,-371.213,-3646.25:99:51217:36531:1454
chr22 42526250 . C CC 49314.70 . AB=0.317466;ABP=12715.3;AC=7;AF=0.5;AN=14;AO=13945;BVAR;CIGAR=1M1I;DP=43926;DPRA=0;EPP=29046.3;EPPR=46118.3;HWE=32.3452;LEN=1;MEANALT=8.85714;MQM=252.266;MQMR=128.955;NS=7;NUMALT=1;ODDS=29.4654;PAIRED=0;PAIREDR=0;REPEAT=C:5;RO=22253;RPP=29046.3;RPPR=46118.3;RUN=1;SAP=30284.2;SRP=48324.8;TYPE=ins;XAI=0.00248386;XAM=0.0154268;XAS=0.0129429;XRI=0.00849148;XRM=0.0183022;XRS=0.00981067 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:10:20:-73.4786,-30.2355,-42.497:6.28:493:150:6 0/1:1703:5087:-14145.7,-6060.16,-11619.4:6.28:90129:62061:2374 0/1:2862:8822:-24432.3,-10873.7,-20519.8:6.28:151246:107777:4148 0/1:3223:10207:-26227.6,-11031.5,-23090.9:6.28:169949:135099:5150 0/1:2045:6889:-16517.6,-6984.39,-15667.4:6.28:107095:97650:3684 0/1:2398:7795:-18220.4,-7041.41,-16873.2:6.28:125437:110470:4200 0/1:1704:5106:-12309.7,-4256.27,-10589.6:6.28:90044:70934:2691
chr22 42526484 rs28371699 A C 49314.70 . AB=0.391599;ABP=2082.92;AC=6;AF=0.428571;AN=14;AO=7986;BVAR;CIGAR=1X;DB;DP=26630;DPRA=0;EPP=3422.04;EPPR=24049;HWE=27.36;LEN=1;MEANALT=6.28571;MQM=253.352;MQMR=253.375;NS=7;NUMALT=1;ODDS=54.6541;PAIRED=0;PAIREDR=0;REPEAT=A:2;RO=17275;RPP=3422.04;RPPR=24049;RUN=1;SAP=17344.4;SRP=37515.2;TYPE=snp;XAI=0.00341635;XAM=0.0226821;XAS=0.0192658;XRI=0.00367721;XRM=0.0122153;XRS=0.00853807 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:9:23:-28.665,-5.02594,-43.6336:8.45:274:440:13 0/1:1243:3284:-4095.5,-707.077,-6479.54:5.44:37965:64454:1856 0/0:6:6252:-1722.02,-3426.75,-20010.7:8.45:199:203407:5782 0/1:2264:5917:-7176.1,-1007.25,-11701:5.44:69105:119381:3384 0/1:1454:3588:-4509.76,-544.266,-6870.33:5.44:44290:70518:1997 0/1:1766:4487:-5500.66,-736.85,-8762.58:5.44:53288:89531:2536 0/1:1244:3079:-3873.82,-516.069,-5960.52:5.44:37506:60691:1707
chr22 42526549 rs56011157 C T 49314.70 . AB=0.522195;ABP=143.452;AC=8;AF=0.571429;AN=14;AO=22421;BVAR;CIGAR=1X;DB;DP=38229;DPRA=0;EPP=963.394;EPPR=13740.4;HWE=27.36;LEN=1;MEANALT=4.85714;MQM=252.703;MQMR=252.215;NS=7;NUMALT=1;ODDS=56.0633;PAIRED=0;PAIREDR=0;REPEAT=C:3;RO=15480;RPP=963.394;RPPR=13740.4;RUN=1;SAP=48689.6;SRP=33617.4;TYPE=snp;XAI=0.00528337;XAM=0.0245001;XAS=0.0192167;XRI=0.00487068;XRM=0.00904391;XRS=0.00417323 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:13:23:-50.165,-7.32594,-31.577:99:489:283:9 1/1:5281:5406:-17058.9,-1742.01,-455.264:99:186390:1905:65 0/1:4240:7746:-13930.3,-314.2,-10509.5:99:151512:113504:3448 0/1:4675:8896:-15121.2,-354.385,-12639.8:99:164176:136606:4149 0/1:2677:5292:-8898.21,-210.951,-7920.16:99:96554:85687:2574 0/1:3295:6459:-10928.1,-237.992,-9572.83:99:118815:103757:3114 0/1:2240:4407:-7479.54,-206.965,-6613.9:99:80837:71219:2121
chr22 42526561 . GG TC 49314.70 . AB=0.476755;ABP=174.53;AC=8;AF=0.571429;AN=14;AO=22811;BVAR;CIGAR=2X;DP=42014;DPRA=0;EPP=921.962;EPPR=14455;HWE=27.36;LEN=2;MEANALT=10;MQM=251.716;MQMR=241.731;NS=7;NUMALT=1;ODDS=97.1201;PAIRED=0;PAIREDR=0;REPEAT=G:2|GGT:2;RO=18680;RPP=921.962;RPPR=14455;RUN=1;SAP=49536.5;SRP=40566.1;TYPE=mnp;XAI=0.00560446;XAM=0.022837;XAS=0.0172325;XRI=0.00510954;XRM=0.00892883;XRS=0.00381928 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:13:32:-45.6293,-3.51753,-53.7726:99:478:569:18 1/1:5388:5469:-16958,-1779.88,-229.274:99:186280:406:13 0/1:4316:8703:-13834.7,-339.711,-13442.6:99:149968:145611:4294 0/1:4815:10002:-15287.5,-280.856,-15936.7:99:166783:173997:5098 0/1:2702:5829:-8869.95,-249.185,-9546.28:99:95861:103376:3056 0/1:3294:7099:-11010.9,-522.522,-11855:99:116616:125995:3692 0/1:2283:4880:-7638.12,-320.822,-8011.15:99:81351:85496:2509
chr22 42526567 rs76312385 G A 49314.70 . AB=0.512704;ABP=49.0248;AC=8;AF=0.571429;AN=14;AO=21967;BVAR;CIGAR=1X;DB;DP=38053;DPRA=0;EPP=597.821;EPPR=16171.7;HWE=27.36;LEN=1;MEANALT=4.71429;MQM=246.71;MQMR=241.719;NS=7;NUMALT=1;ODDS=76.1081;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=15968;RPP=597.821;RPPR=16171.7;RUN=1;SAP=47703.7;SRP=34677.1;TYPE=snp;XAI=0.00550218;XAM=0.0262124;XAS=0.0207102;XRI=0.00457904;XRM=0.00863553;XRS=0.00405649 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:13:26:-43.8415,-0.809721,-33.7662:99:483:372:13 1/1:5138:5229:-16287.4,-1566.4,-241.134:99:179554:1263:51 0/1:4113:7773:-13021.1,-66.6846,-9652.16:99:144030:106598:3640 0/1:4602:8935:-14494.8,-65.1081,-11466.5:99:160376:126728:4314 0/1:2650:5238:-8548.56,-41.9058,-6901.14:99:94543:76239:2577 0/1:3241:6448:-10372.6,-31.7671,-8548.23:99:114921:94651:3198 0/1:2210:4404:-7165.53,-61.4555,-5852.46:99:78956:64367:2175
chr22 42526571 rs74644586 C G 49314.70 . AB=0.423296;ABP=1892.13;AC=8;AF=0.571429;AN=14;AO=20400;BVAR;CIGAR=1X;DB;DP=41756;DPRA=0;EPP=8.83879;EPPR=13875.4;HWE=27.36;LEN=1;MEANALT=7.14286;MQM=243.96;MQMR=238.317;NS=7;NUMALT=1;ODDS=76.1468;PAIRED=0;PAIREDR=0;RO=21023;RPP=8.83879;RPPR=13875.4;RUN=1;SAP=44301;SRP=45653.9;TYPE=snp;XAI=0.00502957;XAM=0.026329;XAS=0.0212994;XRI=0.00550538;XRM=0.00933165;XRS=0.00382628 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:13:32:-36.9207,-3.91753,-60.9242:99:378:644:18 1/1:4752:4789:-12850.9,-1462.67,-102.818:99:142051:406:13 0/1:3821:8671:-10707.4,-434.063,-15231.8:99:114426:164696:4767 0/1:4168:9958:-11603.8,-463.906,-18120.9:99:124371:196783:5690 0/1:2509:6005:-7016.08,-200.109,-10839:99:76127:118604:3463 0/1:3055:7341:-8612.95,-339.428,-13445.7:99:92412:146109:4229 0/1:2082:4960:-5867.86,-198.486,-9057.41:99:63302:98741:2843
chr22 42526573 rs1080996 T G 49314.70 . AB=0.478935;ABP=164.665;AC=8;AF=0.571429;AN=14;AO=26268;BVAR;CIGAR=1X;DB;DP=48153;DPRA=0;EPP=364.104;EPPR=12603.5;HWE=27.36;LEN=1;MEANALT=6.71429;MQM=240.907;MQMR=237.914;NS=7;NUMALT=1;ODDS=120.717;PAIRED=0;PAIREDR=0;RO=21656;RPP=364.104;RPPR=12603.5;RUN=1;SAP=57043.2;SRP=47028.4;TYPE=snp;XAI=0.00602555;XAM=0.0277357;XAS=0.0217101;XRI=0.00561177;XRM=0.00940479;XRS=0.00379303 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:16:35:-53.2875,-0.927531,-59.8379:99:588:661:19 1/1:6181:6212:-19567.2,-1869.81,-92.0387:99:216864:474:15 0/1:4945:9963:-15947.3,-214.292,-15730.7:99:174834:172428:4948 0/1:5467:11336:-17361.7,-145.392,-18456.5:99:191343:203507:5823 0/1:3175:6787:-10266.5,-88.9679,-11172.5:99:113166:123233:3586 0/1:3822:8197:-12456.2,-179.173,-13711.8:99:136507:150459:4319 0/1:2662:5623:-8596.08,-57.3203,-9296.27:99:94932:102712:2946
chr22 42526580 rs1080995 G C 49314.70 . AB=0.503997;ABP=9.29444;AC=8;AF=0.571429;AN=14;AO=29815;BVAR;CIGAR=1X;DB;DP=52393;DPRA=0;EPP=48.3495;EPPR=11542.6;HWE=27.36;LEN=1;MEANALT=7.42857;MQM=232.937;MQMR=238.185;NS=7;NUMALT=1;ODDS=126.745;PAIRED=0;PAIREDR=0;REPEAT=G:2;RO=22075;RPP=48.3495;RPPR=11542.6;RUN=1;SAP=64745.5;SRP=47938.3;TYPE=snp;XAI=0.00621892;XAM=0.0259398;XAS=0.0197208;XRI=0.00542136;XRM=0.00921859;XRS=0.00379723 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:16:37:-56.0063,-1.02834,-68.3095:99:618:755:21 1/1:6993:7111:-22747,-2338.56,-385.292:99:249376:912:28 0/1:5614:10754:-18448.2,-313.63,-16555:99:201589:180554:5059 0/1:6222:12267:-20438.1,-377.316,-19442:99:222938:211870:5934 0/1:3635:7370:-12033.2,-224.484,-11829.5:99:131231:128968:3671 0/1:4307:8810:-14465.1,-423.486,-14464.5:99:156043:156037:4389 0/1:3028:6044:-10057.3,-163.793,-9708.03:99:109952:106071:2973
chr22 42526657 rs72549357 A AA 49314.70 . AB=0.447951;ABP=212.557;AC=3;AF=0.214286;AN=14;AO=4015;BVAR;CIGAR=1M1I;DB;DP=32023;DPRA=0;EPP=68.1323;EPPR=5433.04;HWE=-21.3394;LEN=1;MEANALT=5.85714;MQM=252.351;MQMR=252.096;NS=7;NUMALT=1;ODDS=87.682;PAIRED=0;PAIREDR=0;RO=27762;RPP=68.1323;RPPR=5433.04;RUN=1;SAP=8721.47;SRP=60287.4;TYPE=ins;XAI=0.00714279;XAM=0.0254859;XAS=0.0183431;XRI=0.00666333;XRM=0.0179572;XRS=0.0112938 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:4:24:-41.7175,-3.19835,-64.7075:99:451:715:20 0/0:4:4410:-96.2015,-1370.62,-14617.6:99:389:161740:4390 0/0:2:6611:-206.044,-2155.66,-21893.9:99:181:241158:6553 0/0:6:7677:-265.544,-2492.45,-25486.3:99:483:280714:7604 0/0:14:4420:-231.554,-1389.68,-14505.4:99:1352:159952:4371 0/1:2374:5362:-21675.8,-203.43,-9977.95:99:238746:108777:2945 0/1:1611:3519:-14609.5,-130.746,-6364.27:99:160940:69333:1879
chr22 42526686 . G GG 49314.70 . AB=0.46865;ABP=269.052;AC=7;AF=0.5;AN=14;AO=14605;BVAR;CIGAR=1M1I;DP=31164;DPRA=0;EPP=28750.2;EPPR=29825.6;HWE=32.3452;LEN=1;MEANALT=7.57143;MQM=253.449;MQMR=243.45;NS=7;NUMALT=1;ODDS=25.6046;PAIRED=0;PAIREDR=0;REPEAT=G:5;RO=15977;RPP=28750.2;RPPR=29825.6;RUN=1;SAP=31717.4;SRP=34696.6;TYPE=ins;XAI=0.00649257;XAM=0.0165776;XAS=0.0100851;XRI=0.0052242;XRM=0.018954;XRS=0.0137298 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:2:21:-20.6267,-10.0418,-48.3411:99:158:471:18 0/1:2081:4291:-12329.8,-335.351,-5371.65:99:133291:55982:2114 0/1:2932:6421:-17446.8,-426.145,-8468.19:99:189210:89452:3367 0/1:3528:7485:-20660.6,-506.803,-9647.37:99:223977:101612:3811 0/1:2157:4323:-12414,-346.092,-5227.83:99:134111:54269:2062 0/1:2364:5209:-13436.3,-231.687,-6795.36:99:146817:73033:2778 0/1:1541:3414:-8771.65,-163.307,-4466.42:99:95725:47893:1827
chr22 42526694 rs1065852 G A 49314.70 . AB=0.544568;ABP=218.825;AC=2;AF=0.142857;AN=14;AO=6911;BVAR;CIGAR=1X;DB;DP=35009;DPRA=215.938;EPP=65.2308;EPPR=20299.1;HWE=-23.8382;LEN=1;MEANALT=4;MQM=236.385;MQMR=238.582;NS=7;NUMALT=1;ODDS=19.7266;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=27788;RPP=65.2308;RPPR=20299.1;RUN=1;SAP=15010.1;SRP=60343.9;TYPE=snp;XAI=0.00766272;XAM=0.0235805;XAS=0.0159178;XRI=0.00758111;XRM=0.0180206;XRS=0.0104395 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:27:0,-8.12781,-86.7556:85.67:0:960:27 0/1:2629:4949:-9150.23,-252.183,-7208.45:99:98952:77377:2280 0/1:4183:7560:-14520.7,-416.775,-10570.4:99:156987:113095:3300 0/0:19:8240:-521.819,-2859.8,-25655.3:99:704:279968:8148 0/0:37:4680:-331.278,-1510.27,-14114.9:99:1370:154523:4596 0/0:32:5720:-355.861,-1874.3,-17499.4:99:1184:191670:5647 0/0:11:3833:-193.368,-1270.4,-11694.5:99:394:128186:3790
chr22 42526831 . C CC 5.90 . AB=0.333333;ABP=3.73412;AC=1;AF=0.0714286;AN=14;AO=64;BVAR;CIGAR=1M1I;DP=15177;DPRA=0;EPP=29.6108;EPPR=31989.5;HWE=-19.2686;LEN=1;MEANALT=4;MQM=242.375;MQMR=253.43;NS=7;NUMALT=1;ODDS=1.06176;PAIRED=0;PAIREDR=0;REPEAT=C:2;RO=15013;RPP=29.6108;RPPR=31989.5;RUN=1;SAP=141.985;SRP=32603.3;TYPE=ins;XAI=0.0270638;XAM=0.0323354;XAS=0.00527157;XRI=0.00755391;XRM=0.0170482;XRS=0.00949425 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:3:-3.7,-0.425969,-6.46:5.90:37:68:2 0/0:9:2155:-90.4904,-668.526,-7096.51:99:460:78305:2130 0/0:16:3094:-153.324,-959.422,-10156.5:99:836:111983:3053 0/0:12:3727:-99.3327,-1128.66,-12339.5:99:602:136604:3701 0/0:12:2207:-100.327,-679.378,-7182.9:99:552:79248:2181 0/0:12:2416:-108.104,-750.132,-7871.49:99:526:86786:2384 0/0:2:1575:-46.5646,-503.178,-5145.84:99:90:56749:1562
chr22 42526840 . CC C,CCC 49314.70 . AB=0.418078,0.212582;ABP=677.573,8306.3;AC=8,3;AF=0.571429,0.214286;AN=14;AO=4839,2460;BVAR;CIGAR=1M1D,2M1I;DP=11573;DPRA=0,1928.67;EPP=9256.42,4836.39;EPPR=8847.45;HWE=-10.4044;LEN=1,1;MEANALT=6.57143,7.5;MQM=252.894,253.239;MQMR=253.613;NS=7;NUMALT=2;ODDS=1.54045;PAIRED=0,0;PAIREDR=0;REPEAT=C:5|CCACC:2;RO=4089;RPP=9256.42,4836.39;RPPR=8847.45;RUN=1,1;SAP=10510.8,5344.83;SRP=8882.16;TYPE=del,ins;XAI=0.0105518,0.00952792;XAM=0.0193038,0.022665;XAS=0.00875205,0.0131371;XRI=0.00514347;XRM=0.0145917;XRS=0.00944818 GT:AO:DP:GL:GQ:QA:QR:RO 1/1:1,0:1:-4.2,-0.30103,0,-4.2,-0.30103,-4.2:5.23:42,0:0:0 0/1:773,9:1491:-4299.55,-59.7953,-1626.46,-4456.53,-1804.15,-5831.36:99:47133,414:17436:703 0/1:1093,21:2232:-6252.53,-296.596,-2673.62,-6452.22,-2884.13,-8550.79:99:66196,896:26434:1056 0/1:1216,32:2655:-6913.14,-254.546,-3371.3,-7116.83,-3527.34,-9877.83:99:74028,1735:34678:1380 1/2:619,876:1842:-9037.74,-5266,-5940.18,-3961.83,-815.098,-4598.54:99:42161,57068:7745:319 1/2:690,893:2005:-9735.43,-5512.74,-6359.67,-4431.27,-1015.9,-5252.11:99:47148,59454:9641:385 1/2:447,629:1347:-6540.15,-3834.95,-4373.73,-2847.22,-649.658,-3361.12:99:30217,41468:6147:246
chr22 42526866 . G GG 18.67 . AB=0.333333;ABP=3.73412;AC=1;AF=0.0714286;AN=14;AO=231;BVAR;CIGAR=1M1I;DP=19179;DPRA=0;EPP=265.176;EPPR=21872.6;HWE=-19.2686;LEN=1;MEANALT=3.57143;MQM=246.801;MQMR=253.428;NS=7;NUMALT=1;ODDS=4.28538;PAIRED=0;PAIREDR=0;REPEAT=G:2;RO=18879;RPP=265.176;RPPR=21872.6;RUN=1;SAP=504.62;SRP=40998.2;TYPE=ins;XAI=0.0214287;XAM=0.0285179;XAS=0.0070892;XRI=0.00875722;XRM=0.0179066;XRS=0.00914936 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:3:-5.1,-0.425969,-7.6:18.67:51:80:2 0/0:32:2819:-202.494,-807.683,-9140.4:99:1838:101150:2777 0/0:64:4027:-343.97,-1100.62,-13019.1:99:3464:144301:3955 0/0:84:4964:-492.252,-1400,-15931.8:99:4388:175940:4853 0/0:12:2622:-99.892,-799.918,-8886.71:99:589:98221:2597 0/0:21:2870:-132.265,-837.442,-9688.16:99:1149:107327:2841 0/0:17:1874:-108.329,-538.145,-6318.29:99:1026:70028:1854
chr22 42526898 . CC C 49314.70 . AB=0.335421;ABP=5863.31;AC=6;AF=0.428571;AN=14;AO=8355;BVAR;CIGAR=1M1D;DP=24912;DPRA=1383.83;EPP=17279;EPPR=27111.7;HWE=27.36;LEN=1;MEANALT=6.83333;MQM=253.89;MQMR=253.437;NS=7;NUMALT=1;ODDS=0.847298;PAIRED=0;PAIREDR=0;REPEAT=C:3;RO=16387;RPP=17279;RPPR=27111.7;RUN=1;SAP=18145.7;SRP=35586.9;TYPE=del;XAI=0.00768319;XAM=0.0116242;XAS=0.00394104;XRI=0.00850338;XRM=0.0180515;XRS=0.00954807 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:3:0,-0.90309,-10.92:5.23:0:117:3 0/1:1199:3511:-4468.19,-128.917,-7516.17:99:49079:82946:2296 0/1:1664:4985:-6176.93,-203.755,-10700.8:99:67705:117971:3293 0/1:2173:6149:-8089.07,-247.04,-12940.8:99:88399:142308:3935 0/1:1199:3681:-4651.08,-219.714,-8054.37:99:50311:88126:2448 0/1:1314:3985:-5175.52,-179.141,-8662.41:99:56636:95380:2645 0/1:806:2598:-3184.09,-158.653,-5787.99:99:34522:63455:1767
chr22 42526934 . CC C 49314.70 . AB=0.289303;ABP=10503.2;AC=6;AF=0.428571;AN=14;AO=7878;BVAR;CIGAR=1M1D;DP=27234;DPRA=1512.83;EPP=16712.7;EPPR=21770.9;HWE=27.36;LEN=1;MEANALT=5.5;MQM=253.924;MQMR=253.24;NS=7;NUMALT=1;ODDS=0.847298;PAIRED=0;PAIREDR=0;REPEAT=C:3;RO=19271;RPP=16712.7;RPPR=21770.9;RUN=1;SAP=17109.9;SRP=41849.5;TYPE=del;XAI=0.00887994;XAM=0.0128136;XAS=0.00393369;XRI=0.00881627;XRM=0.0177763;XRS=0.00896004 GT:AO:DP:GL:GQ:QA:QR:RO 0/0:0:3:0,-0.90309,-9.52:5.23:0:102:3 0/1:1190:3845:-6621.64,-162.37,-8706.96:99:73152:96325:2644 0/1:1513:5340:-8495.54,-275.113,-12540:99:93830:138771:3811 0/1:2038:6644:-11561.1,-323.132,-15093.2:99:127297:166545:4576 0/1:1065:4023:-5979.95,-232.028,-9623.25:99:66101:106585:2948 0/1:1286:4480:-7273.25,-223.874,-10379.3:99:80353:114868:3184 0/1:786:2899:-4419.44,-168.712,-6827.31:99:48755:75512:2105
chr22 42526980 . A T 6.67 . AB=0.333333;ABP=3.73412;AC=1;AF=0.0714286;AN=14;AO=44;BVAR;CIGAR=1X;DP=33852;DPRA=0;EPP=19.0002;EPPR=1175.7;HWE=-19.2686;LEN=1;MEANALT=3.42857;MQM=249.045;MQMR=253.181;NS=7;NUMALT=1;ODDS=1.29202;PAIRED=0;PAIREDR=0;REPEAT=AG:2;RO=33604;RPP=19.0002;RPPR=1175.7;RUN=1;SAP=98.5551;SRP=72973.2;TYPE=snp;XAI=0.00822033;XAM=0.0167615;XAS=0.00854119;XRI=0.00929632;XRM=0.0161467;XRS=0.00685034 GT:AO:DP:GL:GQ:QA:QR:RO 0/1:1:3:-3.8,-0.425969,-7.6:6.67:38:80:2 0/0:1:4747:-186.94,-1592.1,-16089:99:40:176729:4691 0/0:3:6740:-119.008,-2118.29,-22750.8:99:107:251572:6706 0/0:14:8411:-216.291,-2639.67,-28370.5:99:554:313379:8348 0/0:3:5004:-73.2522,-1553.91,-16903.7:99:104:187109:4981 0/0:12:5440:-137.902,-1687.75,-18329.4:99:480:202608:5400 0/0:10:3507:-108.477,-1093.82,-11825.3:99:391:130578:3476
chr22 42526998 . G GG 49314.70 . AB=0.622185;ABP=2030.07;AC=6;AF=0.5;AN=12;AO=9726;BVAR;CIGAR=1M1I;DP=15632;DPRA=0;EPP=21122.8;EPPR=881.975;HWE=26.6464;LEN=1;MEANALT=5.5;MQM=253.999;MQMR=253.931;NS=6;NUMALT=1;ODDS=1904.3;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=3635;RPP=21122.8;RPPR=881.975;RUN=1;SAP=21122.8;SRP=7896.31;TYPE=ins;XAI=0.00668033;XAM=0.0102733;XAS=0.00359295;XRI=0.0071001;XRM=0.0117029;XRS=0.00460284 GT:AO:DP:GL:GQ:QA:QR:RO . 0/1:1343:2189:-9384.39,-960.176,-2406.56:5.44:94498:16970:530 0/1:1871:3026:-13079,-1281.82,-3250.21:5.44:132348:23143:729 0/1:2411:3943:-17074.4,-1653.96,-4364.24:5.44:172837:31617:988 0/1:1446:2313:-10049.9,-994.444,-2452.09:5.44:101663:17247:541 0/1:1581:2519:-11115.9,-1282.8,-2677.1:5.44:110606:16845:526 0/1:1074:1642:-7574.77,-795.883,-1622.39:5.44:76370:10236:321
chr22 42527004 . G GG 49314.70 . AB=0.667115;ABP=3787.19;AC=6;AF=0.5;AN=12;AO=10407;BVAR;CIGAR=1M1I;DP=15600;DPRA=0;EPP=22601.5;EPPR=67.1131;HWE=26.6464;LEN=1;MEANALT=5;MQM=254;MQMR=253.917;NS=6;NUMALT=1;ODDS=2369.91;PAIRED=0;PAIREDR=0;REPEAT=G:3|GCT:2;RO=3939;RPP=22601.5;RPPR=67.1131;RUN=1;SAP=22601.5;SRP=8556.44;TYPE=ins;XAI=0.00690926;XAM=0.0107993;XAS=0.00389004;XRI=0.00746599;XRM=0.0119393;XRS=0.00447334 GT:AO:DP:GL:GQ:QA:QR:RO . 0/1:1455:2164:-10813.1,-706.273,-2126.31:99:113412:16897:524 0/1:1999:3000:-14898.7,-993.4,-2953.68:99:155972:23254:739 0/1:2603:3959:-19354.7,-1130.91,-3970.68:99:204129:33200:1057 0/1:1582:2330:-11829.5,-618.462,-2192.73:99:125716:18646:590 0/1:1654:2523:-12477.3,-843.063,-2549.58:99:130398:20095:642 0/1:1114:1624:-8330.52,-480.011,-1508.73:99:88128:12335:387
chr22 42527044 . CC C 49314.70 . AB=0.257511;ABP=3487.77;AC=6;AF=0.5;AN=12;AO=1757;BVAR;CIGAR=1M1D;DP=6823;DPRA=0;EPP=3800.94;EPPR=5362.34;HWE=26.6464;LEN=1;MEANALT=6.16667;MQM=253.981;MQMR=253.903;NS=6;NUMALT=1;ODDS=763.966;PAIRED=0;PAIREDR=0;REPEAT=C:3;RO=4831;RPP=3800.94;RPPR=5362.34;RUN=1;SAP=3818.29;SRP=10493.4;TYPE=del;XAI=0.0105127;XAM=0.0146831;XAS=0.00417041;XRI=0.00686241;XRM=0.0109032;XRS=0.00404074 GT:AO:DP:GL:GQ:QA:QR:RO . 0/1:343:796:-1632.27,-93.2737,-1148.05:99:17135:11757:422 0/1:418:1113:-2063.65,-158.788,-1779.4:99:21302:18146:648 0/1:563:1438:-2734.78,-182.59,-2184.04:99:28486:22369:815 0/1:153:1248:-741.615,-239.081,-2678.49:99:7467:28990:1071 0/1:180:1344:-941.959,-296.313,-2844:99:9017:30153:1121 0/1:100:884:-551.271,-220.007,-1934.01:99:5063:20429:754
chr22 42527245 . C CC 49314.70 . AB=0.274156;ABP=9393.48;AC=6;AF=0.5;AN=12;AO=5811;BVAR;CIGAR=1M1I;DP=21196;DPRA=0;EPP=10662.8;EPPR=31679;HWE=26.6464;LEN=1;MEANALT=8;MQM=237.134;MQMR=252.843;NS=6;NUMALT=1;ODDS=1120.94;PAIRED=0;PAIREDR=0;REPEAT=C:5;RO=14957;RPP=10662.8;RPPR=31679;RUN=1;SAP=12621.4;SRP=32481.7;TYPE=ins;XAI=0.00661986;XAM=0.0122036;XAS=0.00558373;XRI=0.0083671;XRM=0.0123402;XRS=0.00397314 GT:AO:DP:GL:GQ:QA:QR:RO . 0/1:201:2256:-923.691,-437.397,-4944.51:99:9645:54323:2038 0/1:1337:4361:-6537.82,-544.332,-7339.5:99:68023:76933:2890 0/1:1424:5304:-6778.3,-580.609,-9384.03:99:71549:100504:3778 0/1:1046:3340:-5054.81,-346.869,-5535.81:99:53360:58707:2213 0/1:1046:3565:-4953.47,-308.579,-6066.9:99:53058:65432:2468 0/1:757:2370:-3642.45,-199.29,-3896.28:99:38975:41798:1570
chr22 42527304 . G GG 49314.70 . AB=0.286655;ABP=10626.8;AC=6;AF=0.5;AN=12;AO=7703;BVAR;CIGAR=1M1I;DP=26872;DPRA=0;EPP=13891.2;EPPR=40276.4;HWE=26.6464;LEN=1;MEANALT=8.33333;MQM=209.245;MQMR=240.677;NS=6;NUMALT=1;ODDS=7288.92;PAIRED=0;PAIREDR=0;REPEAT=G:4;RO=18889;RPP=13891.2;RPPR=40276.4;RUN=1;SAP=16729.9;SRP=41020;TYPE=ins;XAI=0.00603507;XAM=0.0126279;XAS=0.00659284;XRI=0.00926586;XRM=0.0137899;XRS=0.00452405 GT:AO:DP:GL:GQ:QA:QR:RO . 0/1:597:3213:-3569.76,-404.74,-6770.27:99:38402:73967:2580 0/1:1753:5465:-12020.5,-320.251,-9606.98:99:131678:104866:3661 0/1:1802:6664:-12299.6,-516.859,-12615.4:99:134347:137861:4801 0/1:1318:4200:-9196.95,-307.84,-7832.37:99:100152:84995:2834 0/1:1299:4387:-8983.91,-331.103,-8372.01:99:97895:91101:3041 0/1:934:2943:-6468.32,-214.647,-5479.95:99:70416:59439:1972
chr22 42527457 . G GG 49314.70 . AB=0.296966;ABP=11213.8;AC=6;AF=0.5;AN=12;AO=9298;BVAR;CIGAR=1M1I;DP=31310;DPRA=0;EPP=19950.9;EPPR=12548.9;HWE=26.6464;LEN=1;MEANALT=6;MQM=253.211;MQMR=232.51;NS=6;NUMALT=1;ODDS=16721.3;PAIRED=0;PAIREDR=0;REPEAT=G:3;RO=21545;RPP=19950.9;RPPR=12548.9;RUN=1;SAP=20193.4;SRP=46787.4;TYPE=ins;XAI=0.00276496;XAM=0.0100562;XAS=0.00729127;XRI=0.00462268;XRM=0.012042;XRS=0.00741937 GT:AO:DP:GL:GQ:QA:QR:RO . 0/1:1268:3976:-10456.8,-384.343,-8264.41:99:113091:88737:2621 0/1:2129:6713:-17399.5,-480.72,-14289.6:99:190092:155543:4498 0/1:2414:7623:-19751,-608.786,-16158.6:99:215053:175143:5084 0/1:1184:4568:-9856.33,-443.433,-10499.6:99:107146:114299:3319 0/1:1385:5095:-11319.2,-426.123,-11427.2:99:123589:124795:3645 0/1:918:3335:-7590.22,-281.722,-7543.16:99:82836:82319:2378
chr22 42527471 rs28633410 T C 49314.70 . AB=0.479383;ABP=58.076;AC=10;AF=0.833333;AN=12;AO=24912;BVAR;CIGAR=1X;DB;DP=32853;DPRA=0;EPP=15903.1;EPPR=7910.53;HWE=-20.5115;LEN=1;MEANALT=5;MQM=234.488;MQMR=253.454;NS=6;NUMALT=1;ODDS=1942.13;PAIRED=0;PAIREDR=0;RO=7775;RPP=15903.1;RPPR=7910.53;RUN=1;SAP=54098.7;SRP=16886.2;TYPE=snp;XAI=0.00494173;XAM=0.0108752;XAS=0.0059335;XRI=0.00497381;XRM=0.00913213;XRS=0.00415831 GT:AO:DP:GL:GQ:QA:QR:RO . 1/1:4309:4358:-14322.5,-1366.92,-165.795:99:157919:622:16 0/1:3562:6962:-11985.7,-131.892,-11721.4:99:131745:128809:3365 0/1:3588:7953:-11968.7,-138.872,-14986.9:99:131633:165169:4330 1/1:4698:4743:-15857.7,-1436.62,-146.611:99:175358:790:22 1/1:5309:5352:-17913.1,-1701.89,-141.575:99:197685:224:6 1/1:3446:3485:-11608.8,-973.343,-130.24:99:128864:1325:36
chr22 42527533 rs28624811 A G 49314.70 . AB=0.442687;ABP=1159.19;AC=7;AF=0.583333;AN=12;AO=23579;BVAR;CIGAR=1X;DB;DP=46258;DPRA=0;EPP=26054.3;EPPR=6830.86;HWE=18.5733;LEN=1;MEANALT=5;MQM=232.81;MQMR=253.774;NS=6;NUMALT=1;ODDS=2924.81;PAIRED=0;PAIREDR=0;REPEAT=AG:2;RO=22558;RPP=26054.3;RPPR=6830.86;RUN=1;SAP=51204.2;SRP=48987.1;TYPE=snp;XAI=0.00529606;XAM=0.0115376;XAS=0.00624157;XRI=0.00578305;XRM=0.0107171;XRS=0.00493405 GT:AO:DP:GL:GQ:QA:QR:RO . 1/1:5640:5735:-16960.8,-1571.34,-300.591:99:188075:2961:82 0/1:4891:9932:-14800,-104.887,-16021.3:99:163307:176876:5013 0/1:4825:11082:-14519.6,-152.468,-20013.7:99:160090:221136:6228 0/1:2760:6725:-8283.66,-132.192,-12698.7:99:91095:140151:3936 0/1:3463:7873:-10404,-68.7872,-13701.2:99:115126:151762:4396 0/1:2000:4911:-5973.54,-65.2662,-9334.26:99:66073:103414:2903
chr22 42527595 . C CC 49314.70 . AB=0.444752;ABP=1191.67;AC=6;AF=0.5;AN=12;AO=19940;BVAR;CIGAR=1M1I;DP=44834;DPRA=0;EPP=41225.7;EPPR=49052.8;HWE=26.6464;LEN=1;MEANALT=10;MQM=253.846;MQMR=253.651;NS=6;NUMALT=1;ODDS=15802.6;PAIRED=0;PAIREDR=0;REPEAT=C:4;RO=23855;RPP=41225.7;RPPR=49052.8;RUN=1;SAP=43302.2;SRP=51803.5;TYPE=ins;XAI=0.00573718;XAM=0.0116425;XAS=0.00590534;XRI=0.00312829;XRM=0.0104073;XRS=0.00727905 GT:AO:DP:GL:GQ:QA:QR:RO . 0/1:2887:6400:-16122.4,-244.936,-10034.2:99:176551:108908:3437 0/1:4521:9667:-25602.6,-419.811,-14681.7:99:279891:158551:5014 0/1:4676:10659:-26583.2,-533.773,-17147.2:99:289763:184922:5826 0/1:2567:6095:-14497.4,-712.47,-10062:99:153414:104135:3312 0/1:3347:7487:-19148.2,-1036.39,-11833.2:99:201340:120065:3828 0/1:1942:4526:-11018.5,-474.749,-7337.21:99:117307:76407:2438
chr22 42527793 rs1080989 C T 49314.70 . AB=0.539425;ABP=116.187;AC=2;AF=0.166667;AN=12;AO=4578;BVAR;CIGAR=1X;DB;DP=23758;DPRA=0;EPP=8007.61;EPPR=38635.9;HWE=-20.5115;LEN=1;MEANALT=3.16667;MQM=252.084;MQMR=251.787;NS=6;NUMALT=1;ODDS=1688.52;PAIRED=0;PAIREDR=0;RO=19096;RPP=8007.61;RPPR=38635.9;RUN=1;SAP=9944.01;SRP=41469.4;TYPE=snp;XAI=0.00826549;XAM=0.0146986;XAS=0.00643314;XRI=0.00853044;XRM=0.0137412;XRS=0.00521078 GT:AO:DP:GL:GQ:QA:QR:RO . 0/1:1765:3222:-5919.13,-44.1032,-5031.02:99:65375:55507:1449 0/1:2757:5161:-9268.12,-96.0929,-8231.69:99:102000:90484:2382 0/0:29:5362:-157.429,-1601.99,-18275:99:971:202277:5316 0/0:20:3256:-100.658,-958.501,-11105.3:99:757:123031:3228 0/0:6:4295:-112.856,-1358.64,-14740.2:99:240:162767:4267 0/0:1:2462:-34.675,-767.639,-8459.75:99:30:93643:2454
chr22 42527894 . TTT T 49314.70 . AB=0;ABP=0;AC=12;AF=1;AN=12;AO=7825;BVAR;CIGAR=1M2D;DP=21045;DPRA=0;EPP=16239;EPPR=656.623;HWE=-0;LEN=2;MEANALT=29.5;MQM=248.613;MQMR=228.023;NS=6;NUMALT=1;ODDS=230.833;PAIRED=0;PAIREDR=0;REPEAT=T:10;RO=301;RPP=16239;RPPR=656.623;RUN=1;SAP=16994.8;SRP=656.623;TYPE=del;XAI=0.00617425;XAM=0.0115117;XAS=0.00533745;XRI=0.0166672;XRM=0.0270648;XRS=0.0103976 GT:AO:DP:GL:GQ:QA:QR:RO . 1/1:1083:2817:-12304.6,-7986.47,-7744.28:8.13:51166:496:22 1/1:1681:4528:-19948.5,-13101,-12805.2:8.13:80701:1331:57 1/1:1833:4743:-21107.7,-13716.5,-13386.8:8.13:87173:1385:61 1/1:1086:2952:-14016.7,-9248.56,-9132.48:8.13:55680:1411:61 1/1:1356:3788:-17954.3,-12176.6,-11981.5:8.13:67749:1385:60 1/1:786:2217:-10608.9,-7210.13,-7112.62:8.13:39768:920:40
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