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Commits on Jun 27, 2012
  1. cython support with pure python fallback, pypy tests

    James Casbon authored
  2. Add cython code #25

    James Casbon authored
Commits on Jun 26, 2012
  1. add filters from @libor-m

    James Casbon authored
Commits on Jun 25, 2012
  1. Add error bias filter

    James Casbon authored
Commits on Jun 10, 2012
  1. use ordereddict for headers

    James Casbon authored
Commits on May 22, 2012
  1. include tabix index for tests

    James Casbon authored
  2. convert tests so they are runnable with 2to3, need to include test da…

    James Casbon authored
    …ta in build
Commits on May 18, 2012
  1. @marcelm

    use_2to3 in setup.py, mostly completing Python 3 support.

    marcelm authored
    Also, need to depend on the 'distribute' package for that to work.
    One remaining problem is that the tests are not automatically
    converted when running 'python3 setup.py test'.
Commits on Mar 14, 2012
  1. remove cruft in setup, version bump to 0.4.2

    James Casbon authored
  2. setup.py without import

    James Casbon authored
Commits on Feb 8, 2012
  1. introduce vcf package structure

    James Casbon authored
Commits on Feb 3, 2012
  1. fix argparse requirement for python < 2.6

    James Casbon authored
Commits on Jan 25, 2012
  1. sphinx docs, closes #11

    James Casbon authored
Commits on Jan 24, 2012
  1. missing shebang

    James Casbon authored
  2. 0.2 version bump, update README

    James Casbon authored
Commits on Jan 20, 2012
  1. version bump

    James Casbon authored
  2. add FILTERS.md

    James Casbon authored
  3. argparse for python < 2.7

    James Casbon authored
  4. add filter lines, but writer needs improvement

    James Casbon authored
  5. initial work on an extensible VCF filter

    James Casbon authored
Commits on Jan 19, 2012
  1. Remove ordereddict for performance, replace with genotype method for

    James Casbon authored
    lookup of genotypes
Commits on Jan 16, 2012
  1. run doctest, fixes #5

    James Casbon authored
  2. use ordered dict for samples, fixes #2

    James Casbon authored
  3. include really basic tests

    James Casbon authored
Commits on Jan 12, 2012
  1. add meta to setup.py, note about fork to README

    James Casbon authored
Commits on Oct 30, 2011
  1. vcf_melt for turning wide tsv into long tsv

    James Casbon authored
  2. minimal setup to get into pythonpath

    James Casbon authored
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