Commits on Jan 23, 2012
  1. documentation, fix bug on parsing null genotypes

    James Casbon committed Jan 23, 2012
Commits on Jan 21, 2012
  1. @arq5x

    test_call.py no longer needed

    arq5x committed Jan 21, 2012
  2. @arq5x

    added tests for pi and aaf

    arq5x committed Jan 21, 2012
  3. @arq5x
  4. @arq5x

    test cov. for _Record and _Call

    arq5x committed Jan 21, 2012
  5. @arq5x
  6. @arq5x

    fix splitting bug when phased

    arq5x committed Jan 21, 2012
  7. @arq5x

    cleanup s/genotypes/samples/

    arq5x committed Jan 21, 2012
  8. @arq5x
  9. @arq5x

    s/self.genotypes[s]/self.samples/

    arq5x committed Jan 21, 2012
  10. @arq5x
  11. @arq5x
  12. backwards compatible call data lookup

    James Casbon committed Jan 21, 2012
  13. warning about aggro

    James Casbon committed Jan 21, 2012
  14. merge v0.1

    James Casbon committed Jan 21, 2012
  15. HISTORY changes

    James Casbon committed Jan 21, 2012
Commits on Jan 20, 2012
  1. @arq5x
  2. @arq5x
  3. @arq5x
  4. @arq5x
  5. @arq5x
  6. @arq5x
  7. update README

    James Casbon committed Jan 20, 2012
  8. version bump

    James Casbon committed Jan 20, 2012
  9. add FILTERS.md

    James Casbon committed Jan 20, 2012
  10. add TODOs

    James Casbon committed Jan 20, 2012
  11. vcf filter now inserts into meta, applies ok

    James Casbon committed Jan 20, 2012
  12. argparse for python < 2.7

    James Casbon committed Jan 17, 2012
  13. add vcf_filter.py script

    James Casbon committed Jan 17, 2012
  14. add filter lines, but writer needs improvement

    James Casbon committed Jan 17, 2012
  15. initial work on an extensible VCF filter

    James Casbon committed Jan 17, 2012
  16. typo in HISTORY

    James Casbon committed Jan 20, 2012
  17. writer now correctly writes metadata

    James Casbon committed Jan 20, 2012
  18. git ignore

    James Casbon committed Jan 20, 2012