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Commits on Jun 15, 2016
Commits on Mar 18, 2016
  1. Cut release.

    casbon committed Mar 18, 2016
Commits on Dec 24, 2015
  1. Misc doc updates

    martijnvermaat committed Dec 24, 2015
Commits on Dec 22, 2015
  1. Update __init__.py

    krlk89 committed Dec 22, 2015
  2. Update test_vcf.py

    krlk89 committed Dec 22, 2015
  3. Update parser.py

    krlk89 committed Dec 22, 2015
  4. Update utils.py

    krlk89 committed Dec 22, 2015
  5. Merge pull request #220 from martijnvermaat/travis

    martijnvermaat committed Dec 22, 2015
    Some Travis CI updates
Commits on Dec 19, 2015
  1. Update README.rst

    krlk89 committed Dec 19, 2015
Commits on Dec 2, 2015
  1. Merge pull request #216 from armish/handle-empty-columns

    martijnvermaat committed Dec 2, 2015
    Handle empty columns in Strelka output
Commits on Nov 13, 2015
  1. Merge pull request #212 from alexjironkin/master

    martijnvermaat committed Nov 13, 2015
    Precopiled patterns for improved performance.
  2. Additional switch to pre-compiled re patter.

    alexjironkin committed Nov 13, 2015
    Missed 1 split to be replaced with _row_pattern.split.
Commits on Nov 12, 2015
  1. Added vcf and testcases to demonstrate issue214

    redmar committed Nov 12, 2015
Commits on Oct 23, 2015
  1. Precopiled patterns for improved performance.

    alexjironkin committed Oct 23, 2015
    Patterns for row and ALT encoding are now pre-compiled instead of being compiled each time re.split and re.search is called. Increasing read performance.
Commits on Oct 8, 2015
  1. Merge pull request #211 from jamescasbon/parse-meta-line

    martijnvermaat committed Oct 8, 2015
    More robust parsing of meta-information lines
Commits on Sep 15, 2015
  1. Merge pull request #209 from jamescasbon/issue-201

    martijnvermaat committed Sep 15, 2015
    Configurable encoding reading compressed VCF files
  2. Configurable encoding reading compressed VCF files

    martijnvermaat committed Sep 15, 2015
    The encoding used to read compressed VCF files was fixed to
    ASCII, but is now configurable with the optional `encoding`
    parameter to `vcf.Reader()`.
    
    This is really a stopgap solution to read compressed VCF
    files containing content that cannot be ASCII-decoded. More
    changes are need to properly handle encoding/decoding issues
    on both Python 2 and 3.
    
    Fixes #201
Commits on Sep 14, 2015
  1. Merge pull request #207 from hdashnow/patch-1

    martijnvermaat committed Sep 14, 2015
    Change self.data comment. It returns namedtuple not dict
  2. Merge pull request #203 from mattions/bump_to_dev

    martijnvermaat committed Sep 14, 2015
    Bump the version to development mode
Commits on Aug 21, 2015
Commits on Jul 24, 2015
Commits on Apr 19, 2015
Commits on Mar 14, 2015
  1. Merge pull request #195 from martijnvermaat/metadata-whitespace

    martijnvermaat committed Mar 14, 2015
    Allow for whitespace after commas in metadata lines
Commits on Feb 16, 2015
  1. Merge pull request #190 from chapmanb/master

    martijnvermaat committed Feb 16, 2015
    Support ##contig headers with only ID attributes. Generated by bcftools 1.2 when inputs have no ##contig information