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Commits on Jun 11, 2012
  1. 37% performance improvement

    James Casbon authored
    * use slots for _Calls
    * cache format parsing info
    * do not call function per call
    * do not precompute bases, phase
  2. Version bump, documentation updates

    James Casbon authored
Commits on Jun 10, 2012
  1. travis build

    James Casbon authored
  2. use ordereddict for headers

    James Casbon authored
  3. Merge pull request #44 from martijnvermaat/github-issue-43

    James Casbon authored
    Parse float QUAL values in exponent syntax
Commits on Jun 8, 2012
  1. Martijn Vermaat

    Parse float QUAL values in exponent syntax

    martijnvermaat authored
    Fixes GitHub issue #43. Note that any QUAL value that cannot be parsed as
    int or float is stored as None.
Commits on May 22, 2012
  1. version bump, update documentation

    James Casbon authored
  2. Merge pull request #40 from libor-m/vcf-filter-ad-hoc

    James Casbon authored
    improvments to vcf_filter
  3. include tabix index for tests

    James Casbon authored
  4. distribute compatible testing

    James Casbon authored
  5. convert tests so they are runnable with 2to3, need to include test da…

    James Casbon authored
    …ta in build
  6. convert tests so they are runnable with 2to3, need to include test da…

    James Casbon authored
    …ta in build
  7. no pysam for travis on python 3

    James Casbon authored
  8. travis on 2.5/3.2

    James Casbon authored
  9. Merge pull request #41 from marcelm/master

    James Casbon authored
    Python 3 support
  10. Merge remote-tracking branch 'arq5x/master'

    James Casbon authored
Commits on May 18, 2012
  1. Marcel Martin

    use_2to3 in setup.py, mostly completing Python 3 support.

    marcelm authored
    Also, need to depend on the 'distribute' package for that to work.
    One remaining problem is that the tests are not automatically
    converted when running 'python3 setup.py test'.
Commits on May 17, 2012
  1. Marcel Martin
  2. Marcel Martin
  3. Marcel Martin
  4. Marcel Martin
  5. Marcel Martin
Commits on Apr 24, 2012
  1. remove trailing CR on sample line

    James Casbon authored
Commits on Apr 23, 2012
  1. split samples on tab not space

    James Casbon authored
Commits on Apr 13, 2012
  1. Libor Mořkovský

    var_filter improvments

    libor-m authored
Commits on Apr 6, 2012
  1. Libor Mořkovský
Commits on Apr 5, 2012
  1. Aaron Quinlan
  2. Libor Mořkovský

    vcf_filter improvments

    libor-m authored
  3. Libor Mořkovský

    fixups for vcf_filter

    libor-m authored
  4. Merge branch 'master' of github.com:jamescasbon/PyVCF

    James Casbon authored
  5. Aaron Quinlan
  6. Aaron Quinlan

    optimize _Call.gt_type

    arq5x authored
Commits on Apr 4, 2012
  1. Libor Mořkovský
  2. Merge pull request #37 from arq5x/master

    James Casbon authored
    Fix for Issue #36
  3. Aaron Quinlan
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