Permalink
Commits on Jun 12, 2012
  1. 0.4.6 release

    James Casbon committed Jun 12, 2012
  2. Merge branch 'performance'

    James Casbon committed Jun 12, 2012
Commits on Jun 11, 2012
  1. store order of INFO column, closes #46

    James Casbon committed Jun 11, 2012
  2. 37% performance improvement

    James Casbon committed Jun 11, 2012
    * use slots for _Calls
    * cache format parsing info
    * do not call function per call
    * do not precompute bases, phase
  3. Version bump, documentation updates

    James Casbon committed Jun 11, 2012
Commits on Jun 10, 2012
  1. travis build

    James Casbon committed Jun 10, 2012
  2. use ordereddict for headers

    James Casbon committed Jun 10, 2012
  3. Merge pull request #44 from martijnvermaat/github-issue-43

    James Casbon committed Jun 10, 2012
    Parse float QUAL values in exponent syntax
Commits on Jun 8, 2012
  1. Parse float QUAL values in exponent syntax

    martijnvermaat committed Jun 8, 2012
    Fixes GitHub issue #43. Note that any QUAL value that cannot be parsed as
    int or float is stored as None.
Commits on May 22, 2012
  1. version bump, update documentation

    James Casbon committed May 22, 2012
  2. Merge pull request #40 from libor-m/vcf-filter-ad-hoc

    James Casbon committed May 22, 2012
    improvments to vcf_filter
  3. include tabix index for tests

    James Casbon committed May 22, 2012
  4. distribute compatible testing

    James Casbon committed May 22, 2012
  5. convert tests so they are runnable with 2to3, need to include test da…

    James Casbon committed May 22, 2012
    …ta in build
  6. convert tests so they are runnable with 2to3, need to include test da…

    James Casbon committed May 22, 2012
    …ta in build
  7. no pysam for travis on python 3

    James Casbon committed May 22, 2012
  8. travis on 2.5/3.2

    James Casbon committed May 22, 2012
  9. Merge pull request #41 from marcelm/master

    James Casbon committed May 22, 2012
    Python 3 support
  10. Merge remote-tracking branch 'arq5x/master'

    James Casbon committed May 22, 2012
Commits on May 18, 2012
  1. use_2to3 in setup.py, mostly completing Python 3 support.

    marcelm committed May 18, 2012
    Also, need to depend on the 'distribute' package for that to work.
    One remaining problem is that the tests are not automatically
    converted when running 'python3 setup.py test'.
Commits on May 17, 2012
Commits on Apr 24, 2012
  1. remove trailing CR on sample line

    James Casbon committed Apr 24, 2012
Commits on Apr 23, 2012
  1. split samples on tab not space

    James Casbon committed Apr 23, 2012
Commits on Apr 13, 2012
  1. var_filter improvments

    libor-m committed Apr 13, 2012
Commits on Apr 6, 2012
Commits on Apr 5, 2012
  1. vcf_filter improvments

    libor-m committed Apr 5, 2012
  2. fixups for vcf_filter

    libor-m committed Apr 5, 2012
  3. Merge branch 'master' of github.com:jamescasbon/PyVCF

    James Casbon committed Apr 5, 2012
  4. optimize _Call.gt_type

    arq5x committed Apr 5, 2012