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Commits on Jul 2, 2012
  1. version 0.6.0 release

    casbon committed Jul 2, 2012
  2. Merge pull request #64 from lennax/lenna

    Tweaks to _AltRecord for possible multiple inheritance
    James Casbon committed Jul 2, 2012
  3. Fix Reader super call; pep8.

    Lenna Peterson committed Jul 2, 2012
Commits on Jul 1, 2012
  1. Tweaked super() in Alts for multiple inheritance.

    Lenna Peterson committed Jul 1, 2012
  2. Made _AltRecord into ABC.

    Lenna Peterson committed Jul 1, 2012
Commits on Jun 28, 2012
  1. PEP8

    James Casbon committed Jun 28, 2012
  2. use namedtuple instead of a dict for calldata

    James Casbon committed Jun 28, 2012
  3. remove duplicate model code

    James Casbon committed Jun 28, 2012
  4. statprof profiling

    James Casbon committed Jun 28, 2012
Commits on Jun 27, 2012
  1. Merge pull request #61 from cmclean/master

    Minor patch to Flag output; add ability to explicitly flush/close Writer stream
    James Casbon committed Jun 27, 2012
  2. Modified logic on Flag fields to print only if True,

    but print empty line if False.
    
    Added stream object to Writer so flush and close are
    available without needing to keep a reference to the
    file elsewhere.
    cmclean committed Jun 27, 2012
  3. adjust travis deps

    James Casbon committed Jun 27, 2012
  4. adjust travis deps

    James Casbon committed Jun 27, 2012
  5. cython support with pure python fallback, pypy tests

    James Casbon committed Jun 27, 2012
  6. Add cython code #25

    James Casbon committed Jun 27, 2012
  7. factor out model into separate module

    James Casbon committed Jun 27, 2012
  8. remove cruft

    James Casbon committed Jun 27, 2012
  9. Bump version to 0.5.0

    James Casbon committed Jun 27, 2012
  10. enable travis on py3.2 fixes #56

    James Casbon committed Jun 27, 2012
  11. Merge pull request #59 from msabramo/py32

    Python 3.2 compatibility tweaks
    James Casbon committed Jun 27, 2012
  12. Merge pull request #58 from lennax/lenna

    For pair formatting, check that a flag is true
    James Casbon committed Jun 27, 2012
Commits on Jun 26, 2012
  1. Python 3 compatibility

    msabramo committed Jun 26, 2012
  2. Check that flag is true.

    Lenna Peterson committed Jun 26, 2012
  3. fix syntax error from PR

    James Casbon committed Jun 26, 2012
  4. Merge pull request #54 from msabramo/tox

    Add support for tox (http://tox.testrun.org/)
    James Casbon committed Jun 26, 2012
  5. Merge pull request #55 from cmclean/master

    Modifications to have Writer output match Reader input
    James Casbon committed Jun 26, 2012
  6. add filters from @libor-m

    James Casbon committed Jun 26, 2012
  7. Merge branch 'master' of github.com:jamescasbon/PyVCF

    James Casbon committed Jun 26, 2012
  8. Merge pull request #22 from martijnvermaat/trim-variant

    Trim variant
    James Casbon committed Jun 26, 2012
Commits on Jun 25, 2012
  1. Modify Writer to output FILTER field properly for multiple filters:

      * Writes as ";"-delimited string rather than the Python list representation
      * Writes non-existent or "PASS" filters as "PASS" rather than "."
    
    Modify Writer to output INFO field properly:
      * Writes Flag outputs just as present, not using the X=Y format
      * E.g. the DB flag to indicate presence in dbSNP will be written as "DB", rather than as "DB=True"
    
    Modify Writer to allow different line terminator to be used:
      * Default remains "\r\n" for backward compatibility
    cmclean committed Jun 25, 2012