Performance benchmarks #67

Closed
superbobry opened this Issue Jul 31, 2012 · 2 comments

Projects

None yet

2 participants

@superbobry

Does PyVCF have any? I'm trying to parse dbSNP release with the latest version and it basically takes forever. So having some kind of performance metric would be handy for further development.

@martijnvermaat
Collaborator

See #6 and #25. There are also branches performance (obsolete) and cython2 (I think still undecided?).

Complementing the performance tests with orthogonal cases is of course welcome.

@superbobry

Thanks, closing the issue then, will continue in #6, after I check out @jamescasbon's script.

@superbobry superbobry closed this Aug 6, 2012
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment