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Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

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README.rst

Overview

pybedtools is a Python wrapper for Aaron Quinlan's BEDtools and extends these "genome algebra" programs by offering feature-level manipulations from with Python. See full online documentation, including installation instructions, at http://packages.python.org/pybedtools/.

Created by Ryan Dale 2010. Copyright 2010, 2011, 2012 Ryan Dale, all rights reserved.

pybedtools is released under the GPLv2 license; see LICENSE.txt for more info.

Note

If you use :mod:`pybedtools` in your work, please cite the pybedtools manuscript:

Dale RK, Pedersen BS, and Quinlan AR. 2011. Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Bioinformatics 27(24):3423-3424.

And the BEDTools manuscript:

Quinlan AR and Hall IM, 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26(6):841–842.
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