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@blab @team81-pathogens @nextstrain @artic-network

Pinned repositories

  1. phandango

    an interactive viewer for populations of bacterial genomes linked by a phylogeny

    JavaScript 47 15

  2. nextstrain/auspice

    Web app for visualizing pathogen evolution

    JavaScript 24 8

  3. nextstrain/augur

    Pipeline components for real-time virus analysis

    Python 19 10

1,347 contributions in the last year

Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Mon Wed Fri

Contribution activity

July 2018

Created a pull request in nextstrain/augur that received 28 comments

JSON schema 2.0 proposal

As we roll out modular augur, this is the correct time to make breaking changes to the current JSON schema. Here is my proposal for the meta & tree…

+1,283 −397 28 comments

Created an issue in nextstrain/augur that received 8 comments

add a visualise / view command

There should be a augur visualise or augur view command which, assuming auspice is a sibling directory, copies the JSONs to auspice/data, starts th…


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