ask for help

[ghost]

@jameshadfield , could you please help me show my ml tree with annotation, thanks. :)

[jameshadfield]

Sure. Just visit phandango.net and drag your files (ml tree, annotation CSV) onto the browser. Full instructions are here: https://github.com/jameshadfield/phandango/wiki.

best, james

[ghost]

@jameshadfield could you please help me show my tree, please, my tree is nexus, and when I drag it into the browser, it reported error. Thanks.

[jameshadfield]

Here's the relevant quote from the instructions linked above

Trees must be in Newick format and must end in .tre or .tree (example here). Newick is the standard output from most tree drawing software (e.g. RAxML), but not all. If you need to convert your tree to a different format try using FigTree but watch out - often single quotations are added around taxon names which must be manually removed! Regrettably Nexus files are not currently supported.

https://github.com/jameshadfield/phandango/wiki/Input%20data%20formats#phylogenies-trees

[ghost]

My tree is in nexus format with bootstrap value, is there any software or script that can convert my tree into newick format with bootstrap value,thanks. :)

[jameshadfield]

From the above quote:

If you need to convert your tree to a different format try using FigTree but watch out - often single quotations are added around taxon names which must be manually removed!

[ghost]

@jameshadfield, could you please help me annotate my phyml tree please, if so, I will send my data to you.
Thanks.